Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d025153_circ_g.2 |
ID in PlantcircBase | zma_circ_010287 |
Alias | Zm10circ00040, zma_circ_0003206 |
Organism | Zea mays |
Position | chr10: 106782574-106798402 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d025153 |
Parent gene annotation |
Phospholipid-transporting ATPase 2 |
Parent gene strand | - |
Alternative splicing | Zm00001d025153_circ_g.1 Zm00001d025153_circ_g.3 Zm00001d025153_circ_g.4 Zm00001d025153_circ_g.5 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d025153_T001:5 Zm00001d025153_T007:7 Zm00001d025153_T006:7 Zm00001d025153_T008:5 Zm00001d025153_T009:7 Zm00001d025153_T003:7 Zm00001d025153_T005:6 Zm00001d025153_T011:7 Zm00001d025153_T002:7 Zm00001d025153_T004:7 Zm00001d025153_T012:7 Zm00001d025153_T010:7 Zm00001d025153_T013:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.130490192 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
106797998-106782596(+) 106798342-106798390(-) |
Potential amino acid sequence |
MSNNSYQNLDPLKQISAVMVSLLMSIIFSFAAALTKASSSWDCALYDTVPSLLLIGTTVLQRAI TNRNLMTSGSLLETAFTSLTSLFQMYFS*(+) MALCNTVVPIKSNDGTVSYKAQSQDEEALVNAAAKLNMMLISKDTITAEICFNGSKFWYELLDI LEFTSDRKRMSVVVKEGETGKILLLSKGADEALLPRACPGQQIQRYLEAVEMYSQLGLRTLCLG WRDLKENEYKEWSKNFQKASCSLDNREFKIAEVCNSLEQDLQILGVTAIEDRLQDGVPETIKLL RNAGINVWMLTGDKQNTAIQIGLLCNLITSGPNSQLLSISGKTEEDVLRSLERALFIMKNTSET KMSDL*(-) |
Sponge-miRNAs | zma-miR172a zma-miR172c-3p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b |