Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0596900_circ_g.7 |
ID in PlantcircBase | osa_circ_020594 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 22221815-22223794 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0596900 |
Parent gene annotation |
GTP-binding signal recognition particle SRP54, G-domain containi ng protein. (Os03t0596900-01);Hypothetical conserved gene. (Os03 t0596900-02);Hypothetical conserved gene. (Os03t0596900-03) |
Parent gene strand | - |
Alternative splicing | Os03g0596900_circ_g.1 Os03g0596900_circ_g.2 Os03g0596900_circ_g.3 Os03g0596900_circ_g.4 Os03g0596900_circ_g.5 Os03g0596900_circ_g.6 Os03g0596900_circ_g.8 Os03g0596900_circ_g.9 Os03g0596900_circ_g.10 Os03g0596900_circ_g.11 Os03g0596900_circ_g.12 Os03g0596900_circ_g.13 Os03g0596900_circ_g.14 Os03g0596900_circ_g.15 Os03g0596900_circ_g.16 Os03g0596900_circ_g.17 Os03g0596900_circ_g.18 Os03g0596900_circ_g.19 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0596900-03:1 Os03t0596900-01:6 Os03t0596900-02:6 |
Conservation Information | |
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Conserved circRNAs | osi_circ_004951* osi_circ_013273 |
PMCS | 0.114986637 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
22223745-22223110(-) |
Potential amino acid sequence |
MFFLAGKARFDFKGHILQFSGFVWHESDEKQRAKAKEKLDKCVKDMLLELCWILAIPTPKANIR KEDIVAKLLDFIAEPHAMADSGHSDDQGSNSRKRKRGSTPKSSSKKFDDDDDITPSKKRNKALE YDTDEDEDDADPMKSDSEEDDYDSEKEKAKKNSSDAKDTASKKKAATGSSHKTGTPRTVSKSSS KTPSSKVSKEKESPEDSAKVFSRKKKSVTPKRPSSSEKEIKDKKSSVAHRISRKKPADLKFLHN VLFGRKGKV*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |