Detail information of Os06g0672801_circ_g.2


General Information
CircRNA Name Os06g0672801_circ_g.2
ID in PlantcircBase osa_circ_031968
Alias NA
Organism Oryza sativa
Position chr6: 27930066-27930239  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circseq_cup
Parent gene Os06g0672801
Parent gene annotation Conserved hypothetical protein. (Os06t0672801-01)
Parent gene strand -
Alternative splicing Os06g0672801_circ_g.1 Os06g0672801_circ_g.3 Os06g0672801_circ_g.4 Os06g0672801_circ_g.5 Os06g0672801_circ_g.6 Os06g0672801_circ_g.7 Os06g0672801_circ_g.8 Os06g0672801_circ_g.9 Os06g0672801_circ_g.10 Os06g0672801_circ_g.11 Os06g0672801_circ_g.12 Os06g0672801_circ_g.13 Os06g0672801_circ_g.14
Support reads 5
Tissues root
Exon boundary   No-No
Splicing signals   TG-TT
Number of exons covered Os06t0672801-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGCAGGAGCAAGAATGCCAGGAAGGAGATTTCTGGTCCACTGATGAAGCCAGCCCATACGGC
CAACACTGGTGCGGCCATCAGGAttttttgatgtgggccatgaaaatgttgcaaggacatcttg
aacttggacggtgcgagcatagcaaggtaaacaaaccggcacccaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 174
Transcript exons: 27930066-27930239
TTTTTTGATGTGGGCCATGAAAATGTTGCAAGGACATCTTAAACTTGGACGGTGCGAGCATAGC
AAGGTAAACAAACCGGCACCCAAGAAGCAGGAGCAAGAATGCCAGGAAGGAGATTTCTGGTCCA
CTGATGAAGCCAGCCCATACGGCCAACACTGGTGCGGCCATCAGGA

Transcript length: 174
Transcript exons: 27930066-27930239
TTTTTTGATGTGGGCCATGAAAATGTTGCAAGGACATCTTGAACTTGGACGGTGCGAGCATAGC
AAGGTAAACAAACCGGCACCCAAGAAGCAGGAGCAAGAATGCCAGGAAGGAGATTTCTGGTCCA
CTGATGAAGCCAGCCCATACGGCCAACACTGGTGCGGCCATCAGGA

Transcript length: 174
Transcript exons: 27930066-27930239
TTTTTTGATGTGGGCCATGAAAATGTTGCAAGGACATCTTGAACTTGGACGGTGCGAGCATAGC
AAGGTAAACAAACCGGCGCCCAAGAAGCAGGAGCAAGAATGCCAGGAAGGAGATTTCTGGTCCA
CTGATGAAGCCAGCCCATACGGCCAACACTGGTGCGGCCATCAGGA

Genomic sequence TTTTTTGATGTGGGCCATGAAAATGTTGCAAGGACATCTTGAACTTGGACGGTGCGAGCATAGC
AAGGTAAACAAACCGGCACCCAAGAAGCAGGAGCAAGAATGCCAGGAAGGAGATTTCTGGTCCA
CTGATGAAGCCAGCCCATACGGCCAACACTGGTGCGGCCATCAGGA
Conservation Information
Conserved circRNAs NA
PMCS 0.720500101
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016