Detail information of Os06g0672801_circ_g.3


General Information
CircRNA Name Os06g0672801_circ_g.3
ID in PlantcircBase osa_circ_031969
Alias NA
Organism Oryza sativa
Position chr6: 27930067-27930181  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circseq_cup
Parent gene Os06g0672801
Parent gene annotation Conserved hypothetical protein. (Os06t0672801-01)
Parent gene strand -
Alternative splicing Os06g0672801_circ_g.1 Os06g0672801_circ_g.2 Os06g0672801_circ_g.4 Os06g0672801_circ_g.5 Os06g0672801_circ_g.6 Os06g0672801_circ_g.7 Os06g0672801_circ_g.8 Os06g0672801_circ_g.9 Os06g0672801_circ_g.10 Os06g0672801_circ_g.11 Os06g0672801_circ_g.12 Os06g0672801_circ_g.13 Os06g0672801_circ_g.14
Support reads 4
Tissues root
Exon boundary   No-No
Splicing signals   AT-TT
Number of exons covered Os06t0672801-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAGCAAGGTAAACAAACCGGCACCCAAGAAGCAGGAGCAAGAATGCCAGGAAGGAGtttttga
tgtgggccatgaaaatgttgcaaggacatcttgaacttggacggtgcgagc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 115
Transcript exons: 27930067-27930181
TTTTTGATGTGGGCCATGAAAATGTTGCAAGGACATCTTGAACTTGGACGGTGCGAGCATAGCA
AGGTAAACAAACCGGCACCCAAGAAGCAGGAGCAAGAATGCCAGGAAGGAG

Genomic sequence TTTTTGATGTGGGCCATGAAAATGTTGCAAGGACATCTTGAACTTGGACGGTGCGAGCATAGCA
AGGTAAACAAACCGGCACCCAAGAAGCAGGAGCAAGAATGCCAGGAAGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.612471396
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016