Detail information of Os03g0324200_circ_ag.1


General Information
CircRNA Name Os03g0324200_circ_ag.1
ID in PlantcircBase osa_circ_019571
Alias NA
Organism Oryza sativa
Position chr3: 11771747-11776719  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method circseq_cup
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0324200_circ_ag.2
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   AC-CG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCTTCGACCGCAACGGCCCCGCCGCCATCGCCAAGTACCAGGCCGACAACGCCGTCCCGGGCT
TCGAGAGCGAGCTCGCCTCCGGCACCGGGAGCCCGCgtgagcggcgcctccgacaacctccgcg
gctggtggaaggagaaggtccgcttcgaccgcaacggccccgccgccatcgccaagtaccaggc
cgacaacg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 148
Transcript exons: 11771747-11776719
GTGAGCGGCGCCTCCGACAACCTCCGCGGCTGGTGGAAGGAGAAGGTCCGCTTCGACCGCAACG
GCCCCGCCGCCATCGCCAAGTACCAGGCCGACAACGCCGTCCCGGGCTTCGAGAGCGAGCTCGC
CTCCGGCACCGGGAGCCCGC

Genomic sequence GTGAGCGGCGCCTCCGACAACCTCCGCGGCTGGTGGAAGGAGAAGGTCCGCTTCGACCGCAACG
GCCCCGCCGCCATCGCCAAGTACCAGGCCGACAACGCCGTCCCGGGCTTCGAGAGCGAGCTCGC
CTCCGGCACCGGGAGCCCGCACTCGCTGCAGGAGCTGCAGGACACCACCCTCGGGTCGCTGCTC
TCGGCGCTCATGCAGCACTGCGACCCTCCGCAGCGGCGGTACCCGCTCGAGAAGGGCGTCCCTC
CGCCGTGGTGGCCCACCGGCGACGAGGAGTGGTGGCCGGAGCTCGGCATCCCCAAGGACCAGGG
CCCGCCTCCGTACAAGAAGCCCCATGACCTCAAGAAGGCCTGGAAGGTCAGCGTGCTCACCGCT
GTCATCAAGCACATGTCGCCGGACATCGAGAAGATCCGCCGGCTGGTCCGGCAGTCCAAGTGCC
TCCAGGACAAGATGACCGCCAAGGAGATCTCCACCTGGCTGGCCGTCGTCAAGCAGGAAGAGGA
GCTGTACCTGAAGCTGAACCCCGGTGCCCGCCCTCCGGCACCTACCGGCGGCATCACCAGCGCC
ATATCGTTCAACGCCAGCTCAAGTGAGTACGACGTCGACGTCGTCGACGACTGCAAGGGCGACG
AGGCCGGCAACCAGAAGGCTGTTGTTGTCGCCGACCCGACCGCGTTCAACCTCGGCGCGGCTAT
GCTGAACGACAAGTTCCTCATGCCGGCGTCCATGAAGGAGGAGGCCACCGATGTCGAGTTCATC
CAGAAGAGGAGCGCGTCTGGCGCGGAGCCTGAGCTGATGCTGAACAACCGTGTCTACACCTGCC
ACAATGTCCAGTGCCCGCATAGCGACTATGGATACGGGTTCCTTGACCGGAACGCGCGCAACAG
CCACCAATACACTTGCAAGTACAATGATCCACTCCAGCAGAGCACGGAGAACAAGCCATCGCCA
CCGGCCATCTTCCCGGCAACCTACAACACGCCGAACCAGGCTCTGAACAATCTGGATTTCGGCC
TGCCCATGGATGGCCAGAGGTCAATTACAGAGCTGATGAACATGTACGACAACAACTTCGTGGC
CAACAAGAACCTTAGCAACGACAATGCCACGATCATGGAGAGGCCTAATGCAGTCAACCCAAGG
ATACAGATTGAAGAAGGCTTTTTTGGACAGGGAAGTGGCATCGGCGGCAGCAACGGAGGTGTGT
TCGAAGATGTCAATGGCATGATGCAGCAACCGCAGCAGACCACCCCGGCACAGCAGCAGTTCTT
CATCCGCGACGATACTCCATTCGGTAACCAGATGGGCGACATCAATGGCGCATCGGAGTTCAGG
TTCGGCTCTGGTTTCAACATGTCAGGTGCCGTCGAATACCCCGGCGCAATGCAGGGCCAGCAGA
AGAATGACGGCGCATCGGAGTTTGAGGAATTGGAATGATCCTAAGAGATAGTGCTGGCCAAGTT
ATTTTTACATCATGGCACTCTCTGGATTATTGCACCGAGGTGCTGGAAATCTAGCTTACATTTA
AGTTTGCATACCATTAAAAGAAAAAACTTGTCGTAATGTTTTACTCATTTATGTCTAGTTTGGT
TTTTTCCTAACTGAGCGTTTCAATAATAAATGTATAGCAAACTTATTTTTTTACTTTGATTGAA
ATGGACAATTTTAGAAACAAGATGTATGTGAGTTGAAACATCGATTAATATACTCCCAATAAGA
TATTATCTATACTCCTCTAAAAAGAATTCAATGGTGGTGGTATTGAAGCTGCCATCAACACATA
CTCCCATTACAATTTTTACATATTATCTCTTAAACTTCTTAATATTTACATAACAACTAAATCT
AAATAGATAGCCACATATAAAATTAACGTGGATAATCACATTTTCCTACACATTCAAACTAGAC
AACGTTCATTAGATATTTTATCCTAGTTTGTATGCTTCCAGCCAAAAACTAATTAATCATATTT
TAAATTCAATAACAGTTTAGAGAACTCATTAAAAAAAACTCCCGCCAAACACGTACGTGTACTC
ACACGTTTTGCCCTATTTTTGCATGCCTACCGATGTACGTGCTCCCATAAAAAAACTTGAAAAG
CGCGCAGAAAATCAGTCTCTCCCCCATGTAGCCTCCGGGAGGGAGAACCAATCTGATACTGTAC
TACATACAGTACTAAACAGAACCCTACCGAGGGCAAAACGGTAAACCGGCCTCCCTGCAGCCCC
TGGAGGGCCTGGACACAGTACACCTAGCTATTAGCTCTCTGATCCTGGGACCCCACATGTCACG
GACAGATGCCTGTGTTTCACCTTTTCACCCTCCCAAAGCAACGCAGTTACCGGCTTACCGGAGC
GAGCCGCCGCCGCCGCCGCAGCGCAGCGGCGCAGGGCGGTTCGTTCGTGGGAGGAAGACTAGTT
TTAGGGCGGGATTATAAAAGGGGGAGGGGGAGGAGAAGGTCCCTGTCGCTGTTGCACCCAAGCC
ACCACCCATTTCGGCACACCCTTCCCTCCACTTGCCGATTACTTTTTTGCCCCCCGGCGCGCTG
GGCGCCTTGGCTTTGGCCCTGGCTTTGGCTCCGCTGTTCTTATCTTCCCCACTCGTGCCTGGCT
CTCTCTCTCTCCCTTTCTCCTCTCCTCCAAGGTCATGGCAAAGGAGAAATAACAGCTAGCGGGC
TTGGGGAAGGGAAAACAGCAAGTGGGAGATCGGCAGGGAGAGGTAGGGAGCTCGATCTCGCCTT
TGCTTGCTTGCTGCTATCCCCTTCTCTTTCTGTTGTGGGCTTGCTGTTCTCCATGTCCTCCTGT
TGATGGTTGCTTGTGTTCGAGTTTTTTTCTTTTTTTTTCTTTTTTTTTCTTGGAGAGGATGTGG
TTGTGTTCATGATAGGTTGGTGGTCTGTGATCTGTTTGGGTAGATCTTTTGTCCTCTTTTTCAG
ATATTTCGTGGATGCTAGAGCTGCCTGCGGTAGCCAATTCCTGTTTGGCTACTTCTTCGTTGCC
CTTTATTCCCTTCCAATTTTATTCCGTGATTTTCTGTTCTTGTGCGTAGAATTGTTTCTGCCAA
GCTTGAGTAAATCCATGGCAGAGGTCAAAGCTTAGCTTTTTTCAGATTATACGATTTGCTGCCA
GCCAAAGGAGAAAGGGAAAAAAACTTAGAAATTTTCTACTAGTTTTCTCTTGTTGTGTTCATTA
GATCTCAGAGATTAACCTAATTTAAGGAATACATGTTGTAAATCCTGCTCTGGAAATGTTAAGT
GGTTGGGTGTAAGGAAGCATCTTGTTTTGCATCGAGTTTATGGCCAAAAACAATCATTGATGCT
TCCTCTAAGGCGGTGTATGTTTTCCTCTGTTCTCCATTTGATGTGTTCTTGATCCATTTTCGTC
TCTTGTTTTCTTCTGTTCTTTTAGATGGCCTCCGATTCCTTTTGATAAGCACATGGGTACATGT
TCTTGTTTCCAACAGTCCATGCCGGTCGTGGTAGACCGAAAAAATAATCCATAAAAATATATCC
TTTTTCTGAAATGTTTTTCCCGTGCTTTTCTATTCCTTTTTCATCTCCCACTTTGATCTGATCA
AGGCTTGTTGTTTCATGTGTTTCAAAATACTTCACGGAAAGGATAAGAAAAGGAGAAATTTCAC
ATGTTTAAGTTTCTTTTGATCCCTACTTGTTTCAAAGCAGCATGAAAATACCGTTTCAGCTAAT
CCCGTGCATCACAAAATGTTTTCATGCTTCGGCTTTGACTAATTCTTCCGTTAGTACTTTATTT
ATGATCATGTCTGAATCATGATACCTTTATGCTGTGTAGTATGATTATGTCACAACAAAAGATA
ACCATGTCCTATATGACTGTTAATTGCGTGCTCTTAACTCTGTGAGAGGATTGCAGGAGATATG
TCTGATCAGATAAAGATCTCTCTGTTTCACCAAACACATGCAAAATTAGGCTCTGGCCCTTGCT
TCAATAGGCAAACCTAATTTTACTCGCGCGATAATCTCCTGGTCTCCTGGCTTTCTAGATCTTA
GAATGTTTTCTGAAGGGAAACAAACCAGTACTGCCTCTTTATTTTTGGTAATGGCGTAATTGCC
GCATTAGGATGCTGCGGTAACCGTAGTCGTGTTGCGCATGTATTCTCAGTTAAGGAGGTAGTAG
TAACACTTATTGCGTTTAGACGAAGTAATCAGTTGCTTAAACTTGGTTTTGATTTCTGTAATTA
ACATCAGCTTCTTCTCTTGCTTGTGTGCAGGTGAATTACTACTTGAGTAGAAGTGGTACAAGAA
GAGTCGTCGTCTACCTGTGAGCGAATTATTTCGAGGTTGTGCGTTGCGATGATGGGAGGTGGTC
TGGTGATGGACCAGGGCATGATGTTCCCCGGCGTGCACAACTTCGTGGATCTCCTGCAGCAGAA
CGGCGGCGACAAGAACCTCGGCTTCGGCGCGCTCGTGCCGCAGACGTCGTCGGGGGAGCAGTGC
GTGATGGGGGAGGGCGACCTCGTGGACCCGCCGCCGGAGAGCTTCCCGGACGCCGGTGAGGACG
ACAGCGACGACGACGTGGAGGACATCGAGGAGCTGGAGCGCCGCATGTGGCGCGACCGCATGAA
GCTGAAGCGGCTCAAGGAGCTGCAGCTGAGCCGGGGCAAGGACCCCGCGGGCGGCGTCGTGGGC
GACCCGTCCAAGCCGCGGCAGTCGCAGGAGCAGGCGCGGCGGAAGAAGATGTCGCGCGCGCAGG
ACGGCATCCTCAAGTACATGCTCAAGATGATGGAGGTGTGCCGCGCGCAGGGGTTCGTGTACGG
GATCATCCCGGAGAAGGGCAAGCCGGTGAGCGGCGCCTCCGACAACCTCCGCGGCTGGTGGAAG
GAGAAGGTCCGCTTCGACCGCAACGGCCCCGCCGCCATCGCCAAGTACCAGGCCGACAACGCCG
TCCCGGGCTTCGAGAGCGAGCTCGCCTCCGGCACCGGGAGCCCGC
Conservation Information
Conserved circRNAs NA
PMCS 0.516173292
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016