Detail information of Os03g0324200_circ_ag.2


General Information
CircRNA Name Os03g0324200_circ_ag.2
ID in PlantcircBase osa_circ_019572
Alias NA
Organism Oryza sativa
Position chr3: 11772868-11777816  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method circseq_cup
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0324200_circ_ag.1
Support reads 4
Tissues root
Exon boundary   No-No
Splicing signals   CC-AT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCAAGGATACAGATTGAAGAAGGCTTTTTTGGACAGGGAAGTGGCATCGGCGGCAGCAACGGA
GGTGTGTTCGAAGATGTCAATGGCATGATGCAGCAAcatggagaggcctaatgcagtcaaccca
aggatacagattgaagaaggcttttttggacagggaagtggcatcggcggcagcaacggaggtg
tgttcgaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 124
Transcript exons: 11772868-11777816
CATGGAGAGGCCTAATGCAGTCAACCCAAGGATACAGATTGAAGAAGGCTTTTTTGGACAGGGA
AGTGGCATCGGCGGCAGCAACGGAGGTGTGTTCGAAGATGTCAATGGCATGATGCAGCAA

Genomic sequence CATGGAGAGGCCTAATGCAGTCAACCCAAGGATACAGATTGAAGAAGGCTTTTTTGGACAGGGA
AGTGGCATCGGCGGCAGCAACGGAGGTGTGTTCGAAGATGTCAATGGCATGATGCAGCAACCGC
AGCAGACCACCCCGGCACAGCAGCAGTTCTTCATCCGCGACGATACTCCATTCGGTAACCAGAT
GGGCGACATCAATGGCGCATCGGAGTTCAGGTTCGGCTCTGGTTTCAACATGTCAGGTGCCGTC
GAATACCCCGGCGCAATGCAGGGCCAGCAGAAGAATGACGGCGCATCGGAGTTTGAGGAATTGG
AATGATCCTAAGAGATAGTGCTGGCCAAGTTATTTTTACATCATGGCACTCTCTGGATTATTGC
ACCGAGGTGCTGGAAATCTAGCTTACATTTAAGTTTGCATACCATTAAAAGAAAAAACTTGTCG
TAATGTTTTACTCATTTATGTCTAGTTTGGTTTTTTCCTAACTGAGCGTTTCAATAATAAATGT
ATAGCAAACTTATTTTTTTACTTTGATTGAAATGGACAATTTTAGAAACAAGATGTATGTGAGT
TGAAACATCGATTAATATACTCCCAATAAGATATTATCTATACTCCTCTAAAAAGAATTCAATG
GTGGTGGTATTGAAGCTGCCATCAACACATACTCCCATTACAATTTTTACATATTATCTCTTAA
ACTTCTTAATATTTACATAACAACTAAATCTAAATAGATAGCCACATATAAAATTAACGTGGAT
AATCACATTTTCCTACACATTCAAACTAGACAACGTTCATTAGATATTTTATCCTAGTTTGTAT
GCTTCCAGCCAAAAACTAATTAATCATATTTTAAATTCAATAACAGTTTAGAGAACTCATTAAA
AAAAACTCCCGCCAAACACGTACGTGTACTCACACGTTTTGCCCTATTTTTGCATGCCTACCGA
TGTACGTGCTCCCATAAAAAAACTTGAAAAGCGCGCAGAAAATCAGTCTCTCCCCCATGTAGCC
TCCGGGAGGGAGAACCAATCTGATACTGTACTACATACAGTACTAAACAGAACCCTACCGAGGG
CAAAACGGTAAACCGGCCTCCCTGCAGCCCCTGGAGGGCCTGGACACAGTACACCTAGCTATTA
GCTCTCTGATCCTGGGACCCCACATGTCACGGACAGATGCCTGTGTTTCACCTTTTCACCCTCC
CAAAGCAACGCAGTTACCGGCTTACCGGAGCGAGCCGCCGCCGCCGCCGCAGCGCAGCGGCGCA
GGGCGGTTCGTTCGTGGGAGGAAGACTAGTTTTAGGGCGGGATTATAAAAGGGGGAGGGGGAGG
AGAAGGTCCCTGTCGCTGTTGCACCCAAGCCACCACCCATTTCGGCACACCCTTCCCTCCACTT
GCCGATTACTTTTTTGCCCCCCGGCGCGCTGGGCGCCTTGGCTTTGGCCCTGGCTTTGGCTCCG
CTGTTCTTATCTTCCCCACTCGTGCCTGGCTCTCTCTCTCTCCCTTTCTCCTCTCCTCCAAGGT
CATGGCAAAGGAGAAATAACAGCTAGCGGGCTTGGGGAAGGGAAAACAGCAAGTGGGAGATCGG
CAGGGAGAGGTAGGGAGCTCGATCTCGCCTTTGCTTGCTTGCTGCTATCCCCTTCTCTTTCTGT
TGTGGGCTTGCTGTTCTCCATGTCCTCCTGTTGATGGTTGCTTGTGTTCGAGTTTTTTTCTTTT
TTTTTCTTTTTTTTTCTTGGAGAGGATGTGGTTGTGTTCATGATAGGTTGGTGGTCTGTGATCT
GTTTGGGTAGATCTTTTGTCCTCTTTTTCAGATATTTCGTGGATGCTAGAGCTGCCTGCGGTAG
CCAATTCCTGTTTGGCTACTTCTTCGTTGCCCTTTATTCCCTTCCAATTTTATTCCGTGATTTT
CTGTTCTTGTGCGTAGAATTGTTTCTGCCAAGCTTGAGTAAATCCATGGCAGAGGTCAAAGCTT
AGCTTTTTTCAGATTATACGATTTGCTGCCAGCCAAAGGAGAAAGGGAAAAAAACTTAGAAATT
TTCTACTAGTTTTCTCTTGTTGTGTTCATTAGATCTCAGAGATTAACCTAATTTAAGGAATACA
TGTTGTAAATCCTGCTCTGGAAATGTTAAGTGGTTGGGTGTAAGGAAGCATCTTGTTTTGCATC
GAGTTTATGGCCAAAAACAATCATTGATGCTTCCTCTAAGGCGGTGTATGTTTTCCTCTGTTCT
CCATTTGATGTGTTCTTGATCCATTTTCGTCTCTTGTTTTCTTCTGTTCTTTTAGATGGCCTCC
GATTCCTTTTGATAAGCACATGGGTACATGTTCTTGTTTCCAACAGTCCATGCCGGTCGTGGTA
GACCGAAAAAATAATCCATAAAAATATATCCTTTTTCTGAAATGTTTTTCCCGTGCTTTTCTAT
TCCTTTTTCATCTCCCACTTTGATCTGATCAAGGCTTGTTGTTTCATGTGTTTCAAAATACTTC
ACGGAAAGGATAAGAAAAGGAGAAATTTCACATGTTTAAGTTTCTTTTGATCCCTACTTGTTTC
AAAGCAGCATGAAAATACCGTTTCAGCTAATCCCGTGCATCACAAAATGTTTTCATGCTTCGGC
TTTGACTAATTCTTCCGTTAGTACTTTATTTATGATCATGTCTGAATCATGATACCTTTATGCT
GTGTAGTATGATTATGTCACAACAAAAGATAACCATGTCCTATATGACTGTTAATTGCGTGCTC
TTAACTCTGTGAGAGGATTGCAGGAGATATGTCTGATCAGATAAAGATCTCTCTGTTTCACCAA
ACACATGCAAAATTAGGCTCTGGCCCTTGCTTCAATAGGCAAACCTAATTTTACTCGCGCGATA
ATCTCCTGGTCTCCTGGCTTTCTAGATCTTAGAATGTTTTCTGAAGGGAAACAAACCAGTACTG
CCTCTTTATTTTTGGTAATGGCGTAATTGCCGCATTAGGATGCTGCGGTAACCGTAGTCGTGTT
GCGCATGTATTCTCAGTTAAGGAGGTAGTAGTAACACTTATTGCGTTTAGACGAAGTAATCAGT
TGCTTAAACTTGGTTTTGATTTCTGTAATTAACATCAGCTTCTTCTCTTGCTTGTGTGCAGGTG
AATTACTACTTGAGTAGAAGTGGTACAAGAAGAGTCGTCGTCTACCTGTGAGCGAATTATTTCG
AGGTTGTGCGTTGCGATGATGGGAGGTGGTCTGGTGATGGACCAGGGCATGATGTTCCCCGGCG
TGCACAACTTCGTGGATCTCCTGCAGCAGAACGGCGGCGACAAGAACCTCGGCTTCGGCGCGCT
CGTGCCGCAGACGTCGTCGGGGGAGCAGTGCGTGATGGGGGAGGGCGACCTCGTGGACCCGCCG
CCGGAGAGCTTCCCGGACGCCGGTGAGGACGACAGCGACGACGACGTGGAGGACATCGAGGAGC
TGGAGCGCCGCATGTGGCGCGACCGCATGAAGCTGAAGCGGCTCAAGGAGCTGCAGCTGAGCCG
GGGCAAGGACCCCGCGGGCGGCGTCGTGGGCGACCCGTCCAAGCCGCGGCAGTCGCAGGAGCAG
GCGCGGCGGAAGAAGATGTCGCGCGCGCAGGACGGCATCCTCAAGTACATGCTCAAGATGATGG
AGGTGTGCCGCGCGCAGGGGTTCGTGTACGGGATCATCCCGGAGAAGGGCAAGCCGGTGAGCGG
CGCCTCCGACAACCTCCGCGGCTGGTGGAAGGAGAAGGTCCGCTTCGACCGCAACGGCCCCGCC
GCCATCGCCAAGTACCAGGCCGACAACGCCGTCCCGGGCTTCGAGAGCGAGCTCGCCTCCGGCA
CCGGGAGCCCGCACTCGCTGCAGGAGCTGCAGGACACCACCCTCGGGTCGCTGCTCTCGGCGCT
CATGCAGCACTGCGACCCTCCGCAGCGGCGGTACCCGCTCGAGAAGGGCGTCCCTCCGCCGTGG
TGGCCCACCGGCGACGAGGAGTGGTGGCCGGAGCTCGGCATCCCCAAGGACCAGGGCCCGCCTC
CGTACAAGAAGCCCCATGACCTCAAGAAGGCCTGGAAGGTCAGCGTGCTCACCGCTGTCATCAA
GCACATGTCGCCGGACATCGAGAAGATCCGCCGGCTGGTCCGGCAGTCCAAGTGCCTCCAGGAC
AAGATGACCGCCAAGGAGATCTCCACCTGGCTGGCCGTCGTCAAGCAGGAAGAGGAGCTGTACC
TGAAGCTGAACCCCGGTGCCCGCCCTCCGGCACCTACCGGCGGCATCACCAGCGCCATATCGTT
CAACGCCAGCTCAAGTGAGTACGACGTCGACGTCGTCGACGACTGCAAGGGCGACGAGGCCGGC
AACCAGAAGGCTGTTGTTGTCGCCGACCCGACCGCGTTCAACCTCGGCGCGGCTATGCTGAACG
ACAAGTTCCTCATGCCGGCGTCCATGAAGGAGGAGGCCACCGATGTCGAGTTCATCCAGAAGAG
GAGCGCGTCTGGCGCGGAGCCTGAGCTGATGCTGAACAACCGTGTCTACACCTGCCACAATGTC
CAGTGCCCGCATAGCGACTATGGATACGGGTTCCTTGACCGGAACGCGCGCAACAGCCACCAAT
ACACTTGCAAGTACAATGATCCACTCCAGCAGAGCACGGAGAACAAGCCATCGCCACCGGCCAT
CTTCCCGGCAACCTACAACACGCCGAACCAGGCTCTGAACAATCTGGATTTCGGCCTGCCCATG
GATGGCCAGAGGTCAATTACAGAGCTGATGAACATGTACGACAACAACTTCGTGGCCAACAAGA
ACCTTAGCAACGACAATGCCACGATCATGGAGAGGCCTAATGCAGTCAACCCAAGGATACAGAT
TGAAGAAGGCTTTTTTGGACAGGGAAGTGGCATCGGCGGCAGCAACGGAGGTGTGTTCGAAGAT
GTCAATGGCATGATGCAGCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.393100053
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016