Detail information of BGIOSGA032512_circ_g.1


General Information
CircRNA Name BGIOSGA032512_circ_g.1
ID in PlantcircBase osi_circ_008758
Alias Chr10:2810582_2811927(MH63RS2), Chr10:2880319_2881663(ZS97RS2), Chr10:2810582_2811927(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 2310962-2312307  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA032512
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032512_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TA-AG
Number of exons covered BGIOSGA032512-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAAATCACATAATGTGGACTATGGGGGACGATTTTAATTACCAGTATGCTGAGTCTTGGTTCC
GGAACATGGACAGGCTTATCAATTATGTGAACAAGGgctttcttccaaagatggtgggcagaga
aaagcccaaaaatccaggccatagtccacaagctagttgattctggtcagctagagttcatgta
tgggattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTTTCTTCCAAAGATGGTGGGCAGAGAAAAGCCCAAAAATCCAGGCCATAGTCCACAAGCTAG
TTGATTCTGGTCAGCTAGAGTTCATGTATGGGATTCAATCTCATTGCTATATTGGATTTTGTCT
TTAGAAGTTTGAGAAAATTTGGAAATTTTAAATTCAGAAATGGTGGGTGGTGTATGCATGATGA
AGCCGCCGTCCATTATATTGACATGATTGATCAGACCACACTTGGTCATCGGGTAATCAAGAAA
CAGTTTAACAAGATCCCAAGAGCTGGCTGGCAAATTGATCCTTTTGGTCATTCTGCAGTTCAAG
GTTATTTGCTTGGGGCAGAGGTAATATTAACATCACATTTGAGCACCATGCATGTCGAGTCCTT
ATAGAACTATTGGACCGCTATAATCTCATGCTCCTACATACTATTCCATTTTCTGAAAGCCTTG
CAAATCTATTTATGTGTATTTGTGCAAATGTACCTAAAGTCCTTTTGTTGTTTTAAGTTATCTT
CATATCAAAGTTTAGATTTTGCCAGATGTATCATTTTGCTGGATGTTCAAGAAGTTCACTGTGT
CATAGAATTCTTTTTTCCTCATAATATCGGTGCTAGAGTGTGGAGATTTTACATTTGTTTACAT
TGCAATTCTAGCTTGGTTTCGATTCTATGCATTTTGCGAGAATCGATTACCAAGATAGAGCAAA
GCGTAAAGGAGACAAAGGCCTAGAGGTTATATGGCGCGGCTCAAGAACATTTGGTTCATCTTCT
CAGGTTACTATTGTTCTTTTTTCTTGCAAATAGTTTCATATCTATTCATTAGTAACTTATCATG
TGTTGTTAAGTTGTTGATTCTATTATCACTGTTCATTTAAACATCTGATTAAACTGCAGATCTT
CACAAATGCATTTCCTGTCCATTATAGCCCTCCAGATGGCTTCGGCTTCGAAATTTTCGATGAT
TTTGTACCTGTACAGGTATATGCATGGTTGCAGATCAGCAGTTTCAGTTATCCCCAGATACACA
AATTTCAATTGATTGTTCAACCATTTCGATATAGGATGACATGTTGCTGTTTGACTACAATCTT
AAAGAACGTGTGAATGATTTTGTTGCTGCAGCCTTAAAACAGGTAAATTTTCATTTCTTGGTTT
ATTTCTTCCCAGTTAAAAATCAGCATTGAACAGAAACCCAGATTTGGATTCTGCCTTCTTTTTT
TTTTTTATGTGACAGGCAAATGTTACGCGCACAAATCACATAATGTGGACTATGGGGGACGATT
TTAATTACCAGTATGCTGAGTCTTGGTTCCGGAACATGGACAGGCTTATCAATTATGTGAACAA
GG
Conservation Information
Conserved circRNAs osa_circ_006171
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021