Detail information of Os10g0140200_circ_g.2


General Information
CircRNA Name Os10g0140200_circ_g.2
ID in PlantcircBase osa_circ_006171
Alias Os_ciR837
Organism Oryza sativa
Position chr10: 2480104-2481446  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os10g0140200
Parent gene annotation Glycoside hydrolase, family 38 domain containing protein. (Os10t
0140200-01)
Parent gene strand +
Alternative splicing Os10g0140200_circ_g.3
Support reads 22/4
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0140200-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACAAACCACATAATGTGGACTATGGGGGACGATTTTAATTACCAGTATGCTGAGTCTTGGTTC
CGGAACATGGACAGGCTTATCAATTATGTGAACAAGgctttcttccaaagatggtgggcagaga
aaagcccaaaaatccaggccatagtccacaagctagttgattctggtcagctagagttcatgta
tgggattc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 118
Transcript exons: 2480104-2480153,2481379-2481446
GCTTTCTTCCAAAGATGGTGGGCAGAGAAAAGCCCAAAAATCCAGGCCATATTTTAATTACCAG
TATGCTGAGTCTTGGTTCCGGAACATGGACAGGCTTATCAATTATGTGAACAAG

Transcript length: 153
Transcript exons: 2480104-2480163,2481354-2481446
GCTTTCTTCCAAAGATGGTGGGCAGAGAAAAGCCCAAAAATCCAGGCCATAGTCCACAAGCACA
TAATGTGGACTATGGGGGACGATTTTAATTACCAGTATGCTGAGTCTTGGTTCCGGAACATGGA
CAGGCTTATCAATTATGTGAACAAG

Transcript length: 654
Transcript exons: 2480104-2480192,2480269-2480443,2480755-2480874,2480995-
2481078,2481162-2481233,2481333-2481446
GCTTTCTTCCAAAGATGGTGGGCAGAGAAAAGCCCAAAAATCCAGGCCATAGTCCACAAGCTAG
TTGATTCTGGTCAGCTAGAGTTCATAAATGGTGGGTGGTGTATGCATGATGAAGCCGCCGTCCA
TTATATTGACATGATTGATCAGACCACACTTGGTCATCGGGTAATCAAGAAACAGTTTAACAAG
ATCCCAAGAGCTGGCTGGCAAATTGATCCTTTTGGTCATTCTGCAGTTCAAGGTTATTTGCTTG
GGGCAGAGCTTGGTTTCGATTCTATGCATTTTGCGAGAATCGATTACCAAGATAGAGCAAAGCG
TAAAGGAGACAAAGGCCTAGAGGTTATATGGCGCGGCTCAAGAACATTTGGTTCATCTTCTCAG
ATCTTCACAAATGCATTTCCTGTCCATTATAGCCCTCCAGATGGCTTCGGCTTCGAAATTTTCG
ATGATTTTGTACCTGTACAGGATGACATGTTGCTGTTTGACTACAATCTTAAAGAACGTGTGAA
TGATTTTGTTGCTGCAGCCTTAAAACAGGCAAATGTTACGCGCACAAACCACATAATGTGGACT
ATGGGGGACGATTTTAATTACCAGTATGCTGAGTCTTGGTTCCGGAACATGGACAGGCTTATCA
ATTATGTGAACAAG

Genomic sequence GCTTTCTTCCAAAGATGGTGGGCAGAGAAAAGCCCAAAAATCCAGGCCATAGTCCACAAGCTAG
TTGATTCTGGTCAGCTAGAGTTCATGTATGGGATTCAATCTCATTGCTATATTGGATTTTGTCT
TTAGAAGTTTGAGAAAATTTGGAAATTTTAAATTCAGAAATGGTGGGTGGTGTATGCATGATGA
AGCCGCCGTCCATTATATTGACATGATTGATCAGACCACACTTGGTCATCGGGTAATCAAGAAA
CAGTTTAACAAGATCCCAAGAGCTGGCTGGCAAATTGATCCTTTTGGTCATTCTGCAGTTCAAG
GTTATTTGCTTGGGGCAGAGGTAATATTAACATCACATTTGAGCACCATGCATGTCGAGTCCTT
ATAGAACTATTGGACCGCTATAATCTCATGCTCCTACATACTATTCCATTTTCTGAAAGCCTTG
CAAATCTATTTATGTGTATTTGTGCAAATGTACCTAAAGTCCTTTTGTTGTTTTAAGTTATCTT
CATATCAAAGTTTAGATTTTGCCAGATGTATCATTTTGCTGGATGTTCAAGAAGTTCACTGTGT
CATAGAATTCTTTTTTCCTCATAATATCGGTGCTAGAGTGTGGAGATTTTACATTTGTTTACAT
TGCAATTCTAGCTTGGTTTCGATTCTATGCATTTTGCGAGAATCGATTACCAAGATAGAGCAAA
GCGTAAAGGAGACAAAGGCCTAGAGGTTATATGGCGCGGCTCAAGAACATTTGGTTCATCTTCT
CAGGTTACTATTGTTCTTTTTTCTTGCAAATAGTTTCATATCTATTCATTAGTAACTTATCATG
TGTTGTTAAGTTGTTGATTCTATTATCACTGTTCATTTAAACATCTGATTAAACTGCAGATCTT
CACAAATGCATTTCCTGTCCATTATAGCCCTCCAGATGGCTTCGGCTTCGAAATTTTCGATGAT
TTTGTACCTGTACAGGTATATGCATGGTTGCAGATCAGCAGTTTCAGTTATCCCCAGATACACA
AATTTCAATTGATTGTTCAACCATTTCGATATAGGATGACATGTTGCTGTTTGACTACAATCTT
AAAGAACGTGTGAATGATTTTGTTGCTGCAGCCTTAAAACAGGTAAATTTCCATTTCTTGGTTT
ATTTCTTCCCAGTTAAAAATCAGCATTGAACAGAAACCCAGATTTGGATTCTGCCTTCTTTTTT
TTTTATGTGACAGGCAAATGTTACGCGCACAAACCACATAATGTGGACTATGGGGGACGATTTT
AATTACCAGTATGCTGAGTCTTGGTTCCGGAACATGGACAGGCTTATCAATTATGTGAACAAG
Conservation Information
Conserved circRNAs osi_circ_001066 osi_circ_008758
PMCS 0.415654468
Functional Information
Coding potential Y
Potential coding position 2480286-2481443(+)
2480155-2481436(-)
Potential amino acid sequence MHDEAAVHYIDMIDQTTLGHRVIKKQFNKIPRAGWQIDPFGHSAVQGYLLGAELGFDSMHFARI
DYQDRAKRKGDKGLEVIWRGSRTFGSSSQIFTNAFPVHYSPPDGFGFEIFDDFVPVQDDMLLFD
YNLKERVNDFVAAALKQANVTRTNHIMWTMGDDFNYQYAESWFRNMDRLINYVNKAFFQRWWAE
KSPKIQAIVHKLVDSGQLEFINGGWCMHDEAAVHYIDMIDQTTLGHRVIKKQFNKIPRAGWQID
PFGHSAVQGYLLGAELGFDSMHFARIDYQDRAKRKGDKGLEVIWRGSRTFGSSSQIFTNAFPVH
YSPPDGFGFEIFDDFVPVQDDMLLFDYNLKERVNDFVAAALKQANVTRTNHIMWTMGDDFNYQY
AESWFRNMDRLINYVNKAFFQRWWAEKSPKIQAIVHKLVDSGQLEFINGGWCMHDEAAVHYIDM
IDQTTLGHRVIKKQFNKIPRAGWQIDPFGHSAVQGYLLGAELGFDSMHFARIDYQDRAKRKGDK
GLEVIWRGSRTFGSSSQIFTNAFPVHYSPPDGFGFEIFDDFVPVQDDMLLFDYNLKERVNDFVA
AALKQANVTRTNHIMWTMGDDFNYQYAESWFRNMDRLINYVNKAFFQRWWAEKSPKIQAIVHKL
VDSGQLEFINGGWCMHDEAAVHYIDMIDQTTLGHRVIKKQFNKIPRAGWQIDPFGHSAVQGYLL
GAELGFDSMHFARIDYQDRAKRKGDKGLEVIWRGSRTFGSSSQIFTNAFPVHYSPPDGFGFEIF
DDFVPVQDDMLLFDYNLKERVNDFVAAALKQANVTRTNHIMWTMGDDFNYQYAESWFRNMDRLI
NYVNK(+)
MAWIFGLFSAHHLWKKALFT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017