Detail information of AT3G07100_circ_g.1


General Information
CircRNA Name AT3G07100_circ_g.1
ID in PlantcircBase ath_circ_020224
Alias NA
Organism Arabidpsis thaliana
Position chr3: 2245675-2245919  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, PcircRNA_finder, circRNA_finder
Parent gene AT3G07100
Parent gene annotation Protein transport protein Sec24-like At3g07100
Parent gene strand -
Alternative splicing AT3G07100_circ_g.2 AT3G07100_circ_g.3 AT3G07100_circ_g.4 AT3G07100_circ_g.5 AT3G07100_circ_g.6 AT3G07100_circ_g.7
Support reads 37
Tissues root, whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G07100.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAAACACATGGGGTGATATGAAGGATCACTCTCCCTCAGTTTCTTTACCAACCTCATTAGCTT
CTTTGACATCCCATTCTCTTGCTCTTGAAAGGTAACcattgtgagctatcttagttttgttgaa
cttggcggtgaagttgtagaatccaatcgacataaccactcgaaccgcccatctggtcctcaat
gagatttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 245
Transcript exons: 2245675-2245919
CATTGTGAGCTATCTTAGTTTTGTTGAACTTGGCGGTGAAGTTGTAGAATCCAATCGACATAAC
CACTCGAACCGCCCATCTGGTCCTCAATGAGATTTCTGAGGAGAAGGAAGCCTTCTCGGGGTTG
TTCTCCTTGTCTCACTAGAAAACACATGGGGTGATATGAAGGATCACTCTCCCTCAGTTTCTTT
ACCAACCTCATTAGCTTCTTTGACATCCCATTCTCTTGCTCTTGAAAGGTAAC

Genomic sequence CATTGTGAGCTATCTTAGTTTTGTTGAACTTGGCGGTGAAGTTGTAGAATCCAATCGACATAAC
CACTCGAACCGCCCATCTGGTCCTCAATGAGATTTCTGAGGAGAAGGAAGCCTTCTCGGGGTTG
TTCTCCTTGTCTCACTAGAAAACACATGGGGTGATATGAAGGATCACTCTCCCTCAGTTTCTTT
ACCAACCTCATTAGCTTCTTTGACATCCCATTCTCTTGCTCTTGAAAGGTAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.301837369
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017