Detail information of AT3G07100_circ_g.2


General Information
CircRNA Name AT3G07100_circ_g.2
ID in PlantcircBase ath_circ_020225
Alias At_ciR1520
Organism Arabidpsis thaliana
Position chr3: 2245675-2246864  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ
Parent gene AT3G07100
Parent gene annotation Protein transport protein Sec24-like At3g07100
Parent gene strand -
Alternative splicing AT3G07100_circ_g.1 AT3G07100_circ_g.3 AT3G07100_circ_g.4 AT3G07100_circ_g.5 AT3G07100_circ_g.6 AT3G07100_circ_g.7
Support reads 8
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G07100.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCAGTGTCTGCTTGTCTATACATCTCCCCAAGATCTGTAACCACTGGTGCAACAGATGTGTGT
ACCCTTATACGTCTCTCTCCACAAGAGGCGGTATATcattgtgagctatcttagttttgttgaa
cttggcggtgaagttgtagaatccaatcgacataaccactcgaaccgcccatctggtcctcaat
gagatttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTGTGAGCTATCTTAGTTTTGTTGAACTTGGCGGTGAAGTTGTAGAATCCAATCGACATAAC
CACTCGAACCGCCCATCTGGTCCTCAATGAGATTTCTGAGGAGAAGGAAGCCTTCTCGGGGTTG
TTCTCCTTGTCTCACTAGAAAACACATGGGGTGATATGAAGGATCACTCTCCCTCAGTTTCTTT
ACCAACCTCATTAGCTTCTTTGACATCCCATTCTCTTGCTCTTGAAAGGTAACCTAAGAGACCC
AACACGAAGAAAGACAAGGGTTTCACACATATTATCATGTTTCAAATTCTTGAAAAACACTAAT
GATGCATATACATCATCGAATGTACCGCCTGTTCATATATTCATATGTAAGGATATATGTGGAT
AAAAATACATACCCTTGAGAGGTCTGCTGCAAAGTCAACCCCAAGAAGATTTTTAGCAATGTCA
GGTGAAAGCATCCGGCCAAACCACAAAACTAATCGAAAACCATCATCATATATGTAAAGGCCTC
TAGAATCCAAACTCTCTGCAGCCAGCGGCAATCTCCTTAATACGTCTTTAAAGTCATCGTGGGC
TGCTGATGGCTGCAAGCATGTGAATTCACAAATTATTTACTATTTCTTGAACACTGATGTTTGA
TAATGGACATTGAGATAAAAATACACAAACCTTTAAGAGCCATTCGTCAACACGGAATAAATTG
GGATACAAAAGCTTCAATAGCTTTTTGACAGGCAGAGCCATCATGGTGAAGCCTGCAGCACAGC
GCTCATCAAGAGAAGTATCAGCAGGTCCACCTAGAAGAGGAGTGGACTTAGTAATTGCCAATCC
GTACAATGGCAAGAACTTCAGAGACTCTGGGTATACTAATCTGGACCCCAAGCGATGCTGCACC
GCGTGAAGATTACGATATTCTTTGAGGGCTTTAACAATCTTTTGCTGTATTGCATTCCGTGCAT
CATCCAATTTTGCGGACAAAGATTTCTCAATTGCTGCAGAATTTAAATTGTCATTAAATAGTAT
CAAAAGTAGCATATGAAAAAAATTTGAATATAGCTTACCTAATCTAGCATATAAAGACACAATG
GAACCAGTGTCTGCTTGTCTATACATCTCCCCAAGATCTGTAACCACTGGTGCAACAGATGTGT
GTACCCTTATACGTCTCTCTCCACAAGAGGCGGTATAT
Conservation Information
Conserved circRNAs NA
PMCS 0.18203124
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015