Detail information of AT2G41630_circ_g.5


General Information
CircRNA Name AT2G41630_circ_g.5
ID in PlantcircBase ath_circ_017835
Alias NA
Organism Arabidpsis thaliana
Position chr2: 17356672-17357047  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT2G41630
Parent gene annotation TFIIB1
Parent gene strand -
Alternative splicing AT2G41630_circ_g.6 AT2G41630_circ_g.7
Support reads 5
Tissues seedlings
Exon boundary   No-No
Splicing signals   CT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTCCAATAGGATTAAGGATCGTGTGATCTAAACGTTTCAATTGTTTATAAAGTTGCAATCCA
ATCTCAGAGAAGGTGAGATCTCAAAATGGGGACTACttagtgttctctattatcacaaggataa
taatgtacatacacagcagaacataaatctggcaatgtaaacaaacactctaaacaaccaacag
aaacttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTAGTGTTCTCTATTATCACAAGGATAATAATGTACATACACAGCAGAACATAAATCTGGCAAT
GTAAACAAACACTCTAAACAACCAACAGAAACTTCATCCCTTTGAGGAACAGACTAACACATCA
CGAGCTAAACGCATAAAGTACAAGGAAAGTGAAAACTCTCAATGAAAGATTAAAAAGGAAGCTC
CTTTTGTTCTTTAATTGACAATGTAATTTCACAAACGTATGCAAGAGGCGTGATGATAAATCAA
AGCAAGTTCATACAAAATCAATCTCCAATAGGATTAAGGATCGTGTGATCTAAACGTTTCAATT
GTTTATAAAGTTGCAATCCAATCTCAGAGAAGGTGAGATCTCAAAATGGGGACTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.22831241
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to heat stress
Other Information
References Pan et al., 2017