Detail information of AT2G41630_circ_g.7


General Information
CircRNA Name AT2G41630_circ_g.7
ID in PlantcircBase ath_circ_017837
Alias NA
Organism Arabidpsis thaliana
Position chr2: 17356676-17357047  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT2G41630
Parent gene annotation TFIIB1
Parent gene strand -
Alternative splicing AT2G41630_circ_g.5 AT2G41630_circ_g.6
Support reads 4
Tissues seedlings
Exon boundary   No-No
Splicing signals   CT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTCCAATAGGATTAAGGATCGTGTGATCTAAACGTTTCAATTGTTTATAAAGTTGCAATCCA
ATCTCAGAGAAGGTGAGATCTCAAAATGGGGACTACtgttctctattatcacaaggataataat
gtacatacacagcagaacataaatctggcaatgtaaacaaacactctaaacaaccaacagaaac
ttcatccc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTTCTCTATTATCACAAGGATAATAATGTACATACACAGCAGAACATAAATCTGGCAATGTAA
ACAAACACTCTAAACAACCAACAGAAACTTCATCCCTTTGAGGAACAGACTAACACATCACGAG
CTAAACGCATAAAGTACAAGGAAAGTGAAAACTCTCAATGAAAGATTAAAAAGGAAGCTCCTTT
TGTTCTTTAATTGACAATGTAATTTCACAAACGTATGCAAGAGGCGTGATGATAAATCAAAGCA
AGTTCATACAAAATCAATCTCCAATAGGATTAAGGATCGTGTGATCTAAACGTTTCAATTGTTT
ATAAAGTTGCAATCCAATCTCAGAGAAGGTGAGATCTCAAAATGGGGACTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.173611111
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017