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circRNA ID
AT1G01080_circ_g.2
Alias
ath_circ_000015, 1:45646-45954
Organism
Arabidpsis thaliana
Position
chr1: 45646-45954  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
find_circ; CIRI2
Parent gene
Parent gene annotation
RNA-binding (RRM/RBD/RNP motifs) family protein
Parent gene strand
-
Alternative splicing
Splice junction sequence  
GAATCTTCTTTGGAGTTGAGTTCAAGACTTCAGGGTTTCTTCTTGTTCCTGGATTCATGTCAAC
AGAGTACCTAACCCGCATTTCCCGACCACCTACTTCtgttccattgaatgataaagccgcatca
cgttcttcaccgcttgtaaaagaaagaaaggcaaagactctgtttctcccggtcttacgatcat
gtaacact
Support reads
2/1
Tissues
seedling;flower
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
TGTTCCATTGAATGATAAAGCCGCATCACGTTCTTCACCGCTTGTAAAAGAAAGAAAGGCAAAG
ACTCTGTTTCTCCCGGTCTTACGATCATGTAACACTCTCGTGCTTACGATTGTGCCAAACTTGC
TAAAGTGGTTTCTCAAACCATCAGGCTGTGTGAACCAAGGGAGATTTCCGACATAGACCTTGTG
TTGGCTTTCGTACATCAGAATCTTCTTTGGAGTTGAGTTCAAGACTTCAGGGTTTCTTCTTGTT
CCTGGATTCATGTCAACAGAGTACCTAACCCGCATTTCCCGACCACCTACTTC
Number of exons covered
AT1G01080.2:1
AT1G01080.1:1
AT1G01080.3:1
Conserved circRNAs
NA
Coding potential
NA
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Philips et al., 2020

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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