Detail information of BGIOSGA015338_circ_g.1


General Information
CircRNA Name BGIOSGA015338_circ_g.1
ID in PlantcircBase osi_circ_005379
Alias 4:12883513|12884312
Organism Oryza sativa ssp. indica
Position chr4: 12883513-12884312  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015338
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015338_circ_igg.1 BGIOSGA015338_circ_igg.2 BGIOSGA015338_circ_ag.1 BGIOSGA015338_circ_ig.1
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA015338-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACCCACCGCCCATGATAGAGAATTTGCGGCGCACCTGGAATAACCCAATGGCCACGGTACCAC
GAGTAGAGGATGCTACCAATAGGGCCGAAAGGATTGccgaatgtgaggctggtgttagttgatt
gagtcagcccattcccagagagttgattatagtgcacaagatcagtgacaaaggcgcctattgt
tgatccac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGAATGTGAGGCTGGTGTTAGTTGATTGAGTCAGCCCATTCCCAGAGAGTTGATTATAGTGCA
CAAGATCAGTGACAAAGGCGCCTATTGTTGATCCACCATCAGCATAGGTCGCGATGAATGGACA
AAGTAAGCTTGTGTTGCATTCTGGCTGCACATCCCTATCGGGCGAAGTGCAGAACATATCATCA
CATTTCACCACTTTTGAACTTACTGAGCTCCTAGGGTCATATAATGTCAGCTTTTTCTGCACAC
AAGAAGATGTACGACAAACCATATTATCATTCAGAATTTCACATCTATAATGTACAAAACCCTA
AATGGCAAAAAGAATTTTTGCAAGGTACTGAAAAATAAACTCTAAACCTACCAATATATCGCTC
TTGCGAGGGCATTGCTTGCAGGGGATGCAGTTAACCCAAAATGCACTGCTGCCAGTGTCCACCT
GCACATAGTATTCCATTGCGGGTGTCCCAATCCCTATCTCCGTGTAGTATAGTCTGTGTCAAAC
TCTATCAGATCGTAATAAGCCAACCTACCAAGAAGAAATGGATAGAACCAAAGGAACATTGAAG
CATATACCCTGTGCTGGATGTGCTGATGCCACCAAGGCCACCAAGTGAGAAGTCCGCAGCCACA
AGGCGACTAAGATGGCGGTTCCTATCGTGGGTTTGTAATGCACCTATGTCACTCCCCTTACACC
CACCGCCCATGATAGAGAATTTGCGGCGCACCTGGAATAACCCAATGGCCACGGTACCACGAGT
AGAGGATGCTACCAATAGGGCCGAAAGGATTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021