Detail information of BGIOSGA015338_circ_ig.1


General Information
CircRNA Name BGIOSGA015338_circ_ig.1
ID in PlantcircBase osi_circ_014236
Alias Chr04:15140688_15141559(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 12892877-12893748  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015338_circ_g.1 BGIOSGA015338_circ_igg.1 BGIOSGA015338_circ_igg.2 BGIOSGA015338_circ_ag.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGGCGGAGACGGATGCAAGTATGCTCCTTTTTGCCAACGCAACGACAAATATGCGATAGTTGG
GAAAACGGATGAACTGTGGAACAAACATACTGATCCcctcttcatcaatcagtatcatgtcaag
gctaataagctcgttgctgttaggatttatggcaacccaaagtctaattacccattgttaacag
ctttccat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCTTCATCAATCAGTATCATGTCAAGGCTAATAAGCTCGTTGCTGTTAGGATTTATGGCAAC
CCAAAGTCTAATTACCCATTGTTAACAGCTTTCCATGTTTCCTTTTCATTGTTAACAGCTTGAA
GCATATCACATGCCATTGTAGTTATCCTTCAGTTTTGATAAAAGGAAAAATAATTTTGAATCAG
GCAACCAATTTATATGTCAATGGGACCATGTAGTAAGTGAGTCTATAATCAGCAAAAGTTGATA
TGACGACAACGGTTTAAGCAAATGAATATAAAAAAATGAATATTTTCGGTTTTGATGAAAAAAA
AACTCTCAATTAGGCTACTATATAATATCTGTCTATGGGACCATCTATTAATTAAACTACTTAT
TAGGAAAAAGGTGATATAAGGATCATAATCCAAATATATTTTATCTGCTTCTTCTACCATTAAA
CACAACCTCAAAAGTCAGAAGTGCGCTTTCTTTATTAGGCTTTTAACCTAGTAGTTTGTTAATA
TAGCTCAACAGCAATAGTGATAGTGTCTTTGGTCTATTATTGCGCTATTCAGAAAATTACCAGT
AAATTTTAACTTCTAGTACAATTAGATAACTCGATTCATTGTCAAAATCACAATCGGTAACATA
GCAGTAGAATATGTTCGTCAGAATAGCAAACAGTCCATTCAACAGGCAAAAGATCAGCAAATAA
TTCTTTATTAAAATCAAAATCACAAATCGAGTCCCAGTTTCGATGAAATACCTTTGTGTATTAC
AGATGCGGCGGAGACGGATGCAAGTATGCTCCTTTTTGCCAACGCAACGACAAATATGCGATAG
TTGGGAAAACGGATGAACTGTGGAACAAACATACTGATCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021