Plant Circular RNA Database

Detail information of BGIOSGA010981_circ_g.2

			
						 General Information
					
						CircRNA Name
						BGIOSGA010981_circ_g.2
					
						ID in PlantcircBase
						osi_circ_004728
					
						Alias
						3:10405683|10408702
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr3: 10405683-10408702  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							BGIOSGA010981						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							BGIOSGA010981_circ_g.3 BGIOSGA010981_circ_g.4 BGIOSGA010981_circ_g.5 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						BGIOSGA010981-TA:6

General Information
CircRNA Name	BGIOSGA010981_circ_g.2
ID in PlantcircBase	osi_circ_004728
Alias	3:10405683\|10408702
Organism	Oryza sativa ssp. indica
Position	chr3: 10405683-10408702 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	e-circRNA
Identification method	find_circ
Parent gene	BGIOSGA010981
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	BGIOSGA010981_circ_g.3 BGIOSGA010981_circ_g.4 BGIOSGA010981_circ_g.5
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	BGIOSGA010981-TA:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATATTCCATATCTCAGAGTTGCTTGAAGAGACGTAGCATATGAGTACTTTGCCAGAGTTTCATT
TGTAAAAGCATATAGCGTCCTGATGTATGCAATGGCctgagcaatagcagagatgacaagaaca
ggtaaagttgcaagagcaacaagtgcaacccgccatcccaacagcattccaataagaagagcca
ctgaaact

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGAGCAATAGCAGAGATGACAAGAACAGGTAAAGTTGCAAGAGCAACAAGTGCAACCCGCCAT
CCCAACAGCATTCCAATAAGAAGAGCCACTGAAACTGCAGCGGTGTCTTGTATGAATATGGAAA
GGCGATTACTGAATGCGGCACGGACAAATGTAGCATCATTTGCCAAGCGCATGGATAGTGTATC
AGCACTGTTCTCCTCTTTGTCAAACCATCCAACTTCATTGCGCAGAATTGCTGTGAAGAAATAT
AAAATCAGTGTGGGTTGTGGAGGTAAAAAAAACTCATCGTCGCAGCAGATGCAATAAAAGTAAG
AGGCTTGTATATGTACATATGCACATGGAAATTACCAGAGAACATCATTCTTCTTATGCGCTCG
GTCATCTTCTCTCCCATTATTCCAAAATAGAAATGTTGCAACCAGTTGACCAGCACTGTAATAA
CACCCATGCCTACTATGAATAAGCACCACCTGTTCACTTCATGGTGCATGTCGCTAACATCTAT
TCGGTAATATGCTGACACTATTAGTGCTATTGTGTAAGCAAGCAGTGGATTGAAGGAACCAAAT
ATAGCCGCACCGATTGTGCCTAAAAGTGCATAGGGCCATTCAGCAATACTAAGTGCTGCAAGTC
TCCAAAAGGATGGAGGTTTATGGTGTTGCAACTCTTCTGGTTCACTCTGTTCAGAACTTGTATC
ATCCCGTTCACTCTGCGGCCTACTAAAAGTTTGTGAATGTGATCGCTCGTTCTTTGGATCAGAA
GTTAAGAGAGGAGATATAGGTGAGTCAGGTTCTGAATTTTTTGAAGACTGTCGTTGAATGGGAT
GGATGTCAACTTTTGGAAGATCGGGCAATTTCATTTCAAAACTATCCTGTCTCTTGATGGATGG
CACTCTCTCGGTTGCAACCAAAGGTATCCCGTTGTCTATAGTTTGTTCTGAAGGTGGGCTCTGA
TCCTTCGGGGAATCATGAGAGTTTTTGTTTGTGTCTGATCGCCAAAACTGAAGCATTCCATGTG
TTCTTTGAAGAGAAGGTGATTTGGCCATCTTGGGAGAGGATGATTCTTGAAAACTTTGGCTGGC
CGACAGATCCTCAATTTGGAGTGACTTACGCTCCTTGCCATTCTTGGTTGGCATCCTGACAAAG
ATCAAGAAGCATTAGTAAGCCAGCTCTGACTGAATCATGCAAATTAGACATGCCTAGAGCAAAG
TCAGCACAAGGTTAACTGATATTTGTTCTGAGCAGCATATTTGTGCAGGATGCTTTCAACATTC
ATAACATCATATAATGTTAGAACATGTTGTATGCACATTGAGTTTCAAGCATGAACTAATGCAC
ACAAAATCCTAAGCCTTATGCGGCTTAAGAAAGATGGCACTCTTCAATAATTAGTATTCTCTGT
CACGTCTAAGCTAACTCAGGACCTTTGGTTATGTTCCAATAGTAGGATATCGGACAATTGATAT
GTTTAATTGTAGCCAAGAGGACAACTATATGGAGAATATATGGACTTCTAACCTAGACCAGAAC
CAACTTTGTACTGAACATAAACTAGCGCGGTATTATCCAGAGGAAAAATTATCTTTACCTCTTG
GGAAGCTTTGTTGCTTCCTCACACCTTAAAAGCTCAGCATAAAGGCCATCCAAGTTCAGCAGTT
CATCATGTGTCCCCATTTCAACAAGATGTCCCTCCTCCATCACAGCTATGTAATCAGCATTTTT
AATGAGGCTGAGACGCCGAGCTATTATAATGGTTGACCTTCCCAACATGAGAACATCTAATGCT
TCTTGCACAGCTTTTTCAGCTTCAAAATCAAGCCCTCCTGTGACCTCATCAAGCAAAAGAATTG
AAGGGTTTGAAAGCACGGCCCGGGCAATAGAAATTTTGATCTTTTGTTCATCACTCAGGGCCAT
ACCAGCTCGACCAACCTAGGAAGGTACAAAAGAATAAATGGTTAAGAAATGAAACAAACTCGCC
ATGCTAACCAGCCTACAATCCTAGAACGTTTCTTAAAGAACGCCCTGTAACCTACACAGCTACA
CCATGATATGGTACTGCTGTTACCTGGGTTTCATATCCCTTTTCAAGTGAACTAATGAACCCAT
GGGCATGTGCTGTCTTAGCTGCCTCTTCTATCTGATCAAAGGTAGCAGATCTTCCGTAAGCAAT
ATTTTCCCGAATGCTCAAACTCAACAATGCGGGTTCTTGGGTCACTAGACCAATTTGGCTTCTC
AACCATTCTACTTTCAAATTTTTTATATTTTCCCCATCCAAAAGTACTTCTCCTGAAATCATTA
AAAAATAGCTTTAGCAAATGGATAAAATGGAATGGGAAAAAAATCAAATATGCATCTTATTGGT
ATTACCTAAGGTTGGATCATAGAATCTCTCCATTAGAGGAATTATGCTACTTTTCCCTGAGCCA
TTTCTACCAACAAGTGCAACAGTTTTTCTGGCAGGTACAGTGAGAAAGAAACCACTTAAAATTG
GAATTTCAGGCCGGGAGAGATAACTAAAATACACATTCCTGAATTCAATGTTCCCTTGCACTAG
AGGCAAGGTGGAGCCTTCTTGATTGGTGCTGGAAGTTGAACGGCTTATCATCTCATACAGTCTA
TAAGCAGCAATACGTCCTTGTTCAAATGAATAGAAGTTCGTAGCTGCTTGGTTCAAACCACTAT
AAATTGGGAAAATATTAGATAAGCCACTAGTCGATGAAAATAGAGGGAAAATTATCTGATTAAG
TTGCTTACAGGCCACTTAGAATTACGGAGAACAAAGCTACCACAACTTGACCACCATCAGCTTT
TCCCCGAGCAATCAGGTGCCTTCCAACCCAAAGTTGCAGAGCACAAGAACAAATGGCAAGCCCA
TAAGTAAATCCAAGGCCAATCCCTTGCACAAGGCTTATCAATATTCCATATCTCAGAGTTGCTT
GAAGAGACGTAGCATATGAGTACTTTGCCAGAGTTTCATTTGTAAAAGCATATAGCGTCCTGAT
GTATGCAATGGC
						
					

			
		

Sequences
Splice junction sequence	ATATTCCATATCTCAGAGTTGCTTGAAGAGACGTAGCATATGAGTACTTTGCCAGAGTTTCATT TGTAAAAGCATATAGCGTCCTGATGTATGCAATGGCctgagcaatagcagagatgacaagaaca ggtaaagttgcaagagcaacaagtgcaacccgccatcccaacagcattccaataagaagagcca ctgaaact
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGAGCAATAGCAGAGATGACAAGAACAGGTAAAGTTGCAAGAGCAACAAGTGCAACCCGCCAT CCCAACAGCATTCCAATAAGAAGAGCCACTGAAACTGCAGCGGTGTCTTGTATGAATATGGAAA GGCGATTACTGAATGCGGCACGGACAAATGTAGCATCATTTGCCAAGCGCATGGATAGTGTATC AGCACTGTTCTCCTCTTTGTCAAACCATCCAACTTCATTGCGCAGAATTGCTGTGAAGAAATAT AAAATCAGTGTGGGTTGTGGAGGTAAAAAAAACTCATCGTCGCAGCAGATGCAATAAAAGTAAG AGGCTTGTATATGTACATATGCACATGGAAATTACCAGAGAACATCATTCTTCTTATGCGCTCG GTCATCTTCTCTCCCATTATTCCAAAATAGAAATGTTGCAACCAGTTGACCAGCACTGTAATAA CACCCATGCCTACTATGAATAAGCACCACCTGTTCACTTCATGGTGCATGTCGCTAACATCTAT TCGGTAATATGCTGACACTATTAGTGCTATTGTGTAAGCAAGCAGTGGATTGAAGGAACCAAAT ATAGCCGCACCGATTGTGCCTAAAAGTGCATAGGGCCATTCAGCAATACTAAGTGCTGCAAGTC TCCAAAAGGATGGAGGTTTATGGTGTTGCAACTCTTCTGGTTCACTCTGTTCAGAACTTGTATC ATCCCGTTCACTCTGCGGCCTACTAAAAGTTTGTGAATGTGATCGCTCGTTCTTTGGATCAGAA GTTAAGAGAGGAGATATAGGTGAGTCAGGTTCTGAATTTTTTGAAGACTGTCGTTGAATGGGAT GGATGTCAACTTTTGGAAGATCGGGCAATTTCATTTCAAAACTATCCTGTCTCTTGATGGATGG CACTCTCTCGGTTGCAACCAAAGGTATCCCGTTGTCTATAGTTTGTTCTGAAGGTGGGCTCTGA TCCTTCGGGGAATCATGAGAGTTTTTGTTTGTGTCTGATCGCCAAAACTGAAGCATTCCATGTG TTCTTTGAAGAGAAGGTGATTTGGCCATCTTGGGAGAGGATGATTCTTGAAAACTTTGGCTGGC CGACAGATCCTCAATTTGGAGTGACTTACGCTCCTTGCCATTCTTGGTTGGCATCCTGACAAAG ATCAAGAAGCATTAGTAAGCCAGCTCTGACTGAATCATGCAAATTAGACATGCCTAGAGCAAAG TCAGCACAAGGTTAACTGATATTTGTTCTGAGCAGCATATTTGTGCAGGATGCTTTCAACATTC ATAACATCATATAATGTTAGAACATGTTGTATGCACATTGAGTTTCAAGCATGAACTAATGCAC ACAAAATCCTAAGCCTTATGCGGCTTAAGAAAGATGGCACTCTTCAATAATTAGTATTCTCTGT CACGTCTAAGCTAACTCAGGACCTTTGGTTATGTTCCAATAGTAGGATATCGGACAATTGATAT GTTTAATTGTAGCCAAGAGGACAACTATATGGAGAATATATGGACTTCTAACCTAGACCAGAAC CAACTTTGTACTGAACATAAACTAGCGCGGTATTATCCAGAGGAAAAATTATCTTTACCTCTTG GGAAGCTTTGTTGCTTCCTCACACCTTAAAAGCTCAGCATAAAGGCCATCCAAGTTCAGCAGTT CATCATGTGTCCCCATTTCAACAAGATGTCCCTCCTCCATCACAGCTATGTAATCAGCATTTTT AATGAGGCTGAGACGCCGAGCTATTATAATGGTTGACCTTCCCAACATGAGAACATCTAATGCT TCTTGCACAGCTTTTTCAGCTTCAAAATCAAGCCCTCCTGTGACCTCATCAAGCAAAAGAATTG AAGGGTTTGAAAGCACGGCCCGGGCAATAGAAATTTTGATCTTTTGTTCATCACTCAGGGCCAT ACCAGCTCGACCAACCTAGGAAGGTACAAAAGAATAAATGGTTAAGAAATGAAACAAACTCGCC ATGCTAACCAGCCTACAATCCTAGAACGTTTCTTAAAGAACGCCCTGTAACCTACACAGCTACA CCATGATATGGTACTGCTGTTACCTGGGTTTCATATCCCTTTTCAAGTGAACTAATGAACCCAT GGGCATGTGCTGTCTTAGCTGCCTCTTCTATCTGATCAAAGGTAGCAGATCTTCCGTAAGCAAT ATTTTCCCGAATGCTCAAACTCAACAATGCGGGTTCTTGGGTCACTAGACCAATTTGGCTTCTC AACCATTCTACTTTCAAATTTTTTATATTTTCCCCATCCAAAAGTACTTCTCCTGAAATCATTA AAAAATAGCTTTAGCAAATGGATAAAATGGAATGGGAAAAAAATCAAATATGCATCTTATTGGT ATTACCTAAGGTTGGATCATAGAATCTCTCCATTAGAGGAATTATGCTACTTTTCCCTGAGCCA TTTCTACCAACAAGTGCAACAGTTTTTCTGGCAGGTACAGTGAGAAAGAAACCACTTAAAATTG GAATTTCAGGCCGGGAGAGATAACTAAAATACACATTCCTGAATTCAATGTTCCCTTGCACTAG AGGCAAGGTGGAGCCTTCTTGATTGGTGCTGGAAGTTGAACGGCTTATCATCTCATACAGTCTA TAAGCAGCAATACGTCCTTGTTCAAATGAATAGAAGTTCGTAGCTGCTTGGTTCAAACCACTAT AAATTGGGAAAATATTAGATAAGCCACTAGTCGATGAAAATAGAGGGAAAATTATCTGATTAAG TTGCTTACAGGCCACTTAGAATTACGGAGAACAAAGCTACCACAACTTGACCACCATCAGCTTT TCCCCGAGCAATCAGGTGCCTTCCAACCCAAAGTTGCAGAGCACAAGAACAAATGGCAAGCCCA TAAGTAAATCCAAGGCCAATCCCTTGCACAAGGCTTATCAATATTCCATATCTCAGAGTTGCTT GAAGAGACGTAGCATATGAGTACTTTGCCAGAGTTTCATTTGTAAAAGCATATAGCGTCCTGAT GTATGCAATGGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osa_circ_019188* 						
					
						PMCS

Conservation Information
Conserved circRNAs	osa_circ_019188*
PMCS

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							10408295-10405685(-)
10405914-10408617(-)
10405748-10408664(-)
						
					

						Potential amino acid sequence
						
							MISRSTSSTNQEGSTLPLVQGNIEFRNVYFSYLSRPEIPILSGFFLTVPARKTVALVGRNGSGK
SSIIPLMERFYDPTLGEVLLDGENIKNLKVEWLRSQIGLVTQEPALLSLSIRENIAYGRSATFD
QIEEAAKTAHAHGFISSLEKGYETQVGRAGMALSDEQKIKISIARAVLSNPSILLLDEVTGGLD
FEAEKAVQEALDVLMLGRSTIIIARRLSLIKNADYIAVMEEGHLVEMGTHDELLNLDGLYAELL
RCEEATKLPKRMPTKNGKERKSLQIEDLSASQSFQESSSPKMAKSPSLQRTHGMLQFWRSDTNK
NSHDSPKDQSPPSEQTIDNGIPLVATERVPSIKRQDSFEMKLPDLPKVDIHPIQRQSSKNSEPD
SPISPLLTSDPKNERSHSQTFSRPQSERDDTSSEQSEPEELQHHKPPSFWRLAALSIAEWPYAL
LGTIGAAIFGSFNPLLAYTIALIVSAYYRIDVSDMHHEVNRWCLFIVGMGVITVLVNWLQHFYF
GIMGEKMTERIRRMMFSAILRNEVGWFDKEENSADTLSMRLANDATFVRAAFSNRLSIFIQDTA
AVSVALLIGMLLGWRVALVALATLPVLVISAIAQAIAYIRTLYAFTNETLAKYSYATSLQATLR
YGILISLVQGIGLGFTYGLAICSCALQLWVGRHLIARGKADGGQVVVALFSVILSGLGLNQAAT
NFYSFEQGRIAAYRLYEMISRSTSSTNQEGSTLPLVQGNIEFRNVYFSYLSRPEIPILSGFFLT
VPARKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKVEWLRSQIGLVTQEPALL
SLSIRENIAYGRSATFDQIEEAAKTAHAHGFISSLEKGYETQVGRAGMALSDEQKIKISIARAV
LSNPSILLLDEVTGGLDFEAEKAVQEALDVLMLGRSTIIIARRLSLIKNADYIAVMEEGHLVEM
GTHDELLNLDGLYAELLRCEEATKLPKRMPTKNGKERKSLQIEDLSASQSFQESSSPKMAKSPS
LQRTHGMLQFWRSDTNKNSHDSPKDQSPPSEQTIDNGIPLVATERVPSIKRQDSFEMKLPDLPK
VDIHPIQRQSSKNSEPDSPISPLLTSDPKNERSHSQTFSRPQSERDDTSSEQSEPEELQHHKPP
SFWRLAALSIAEWPYALLGTIGAAIFGSFNPLLAYTIALIVSAYYRIDVSDMHHEVNRWCLFIV
GMGVITVLVNWLQHFYFGIMGEKMTERIRRMMFSAILRNEVGWFDKEENSADTLSMRLANDATF
VRAAFSNRLSIFIQDTAAVSVALLIGMLLGWRVALVALATLPVLVISAIAQAIAYIRTLYAFTN
ETLAKYSYATSLQATLRYGILISLVQGIGLGFTYGLAICSCALQLWVGRHLIARGKADGGQVVV
ALFSVILSGLGLNQAATNFYSFEQGRIAAYRLYEMISRSTSSTNQEGSTLPLVQGNIEFRNVYF
SYLSRPEIPILSGFFLTVPARKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKV
EWLRSQIGLVTQEPALLSLSIRENIAYGRSATFDQIEEAAKTAHAHGFISSLEKGYETQVGRAG
MALSDEQKIKISIARAVLSNPSILLLDEVTGGLDFEAEKAVQEALDVLMLGRSTIIIARRLSLI
KNADYIAVMEEGHLVEMGTHDELLNLDGLYAELLRCEEATKLPKRMPTKNGKERKSLQIEDLSA
SQSFQESSSPKMAKSPSLQRTHGMLQFWRSDTNKNSHDSPKDQSPPSEQTIDNGIPLVATERVP
SIKRQDSFEMKLPDLPKVDIHPIQRQSSKNSEPDSPISPLLTSDPKNERSHSQTFSRPQSERDD
TSSEQSEPEELQHHKPPSFWRLAALSIAEWPYALLGTIGAAIFGSFNPLLAYTIALIVSAYYRI
DVSDMHHEVNRWCLFIVGMGVITVLVNWLQHFYFGIMGEKMTERIRRMMFSAILRNEVGWFDKE
ENSADTLSMRLANDATFVRAAFSNRLSIFIQDTAAVSVALLIGMLLGWRVALVALATLPVLVIS
AIAQAIAYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGIGLGFTYGLAICSCALQLWV
GRHLIARGKADGGQVVVALFSVILSGLGLNQAATNFYSFEQGRIAAYRLYEMISRSTSSTNQEG
STLPLVQGNIEFRNVYFSYLSRPEIPILSGFFLTVPARKTVALVGRNGSGKSSIIPLMERFYDP
TLGEVLLDGENIKNLKVEWLRSQIGLVTQEPALLSLSIRENIAYGRSATFDQIEEAAKTAHAHG
FISSLEKGYETQVGRAGMALSDEQKIKISIARAVLSNPSILLLDEVTGGLDFEAEKAVQEALDV
LMLGRSTIIIARRLSLIKNADYIAVMEEGHLVEMGTHDELLNLDGLYAELLRCEEATKLPKRMP
TKNGKERKSLQIEDLSASQSFQESSSPKMAKSPSLQRTHGMLQFWRSDTNKNSHDSPKDQSPPS
EQTIDNGIPLVATERVPSIKRQDSFEMKLPDLPKVDIHPIQRQSSKNSEPDSPISPLLTSDPKN
ERSHSQTFSRPQSERDDTSSEQSEPEELQHHKPPSFWRLAALSIAEWPYALLGTIGAAIFGSFN
PLLAYTIALIVSAYYRIDVSDMHHEVNRWCLFIVGMGVITVLVNWLQHFYFGIMGEKMTERIRR
MMFSAILRNEVGWFDKEENSADTLSMRLANDATFVRAAFSNRLSIFIQDTAAVSVALLIGMLLG
WRVALVALATLPVLVISAIAQ(-)
MKLDGLTKRRTVLIHYPCAWQMMLHLSVPHSVIAFPYSYKTPLQFQWLFLLECCWDGGLHLLLL
QLYLFLSSLLLLRPLHTSGRYMLLQMKLWQSTHMLRLFKQL*(-)
MAGCTCCSCNFTCSCHLCYCSGHCIHQDAICFYK*(-)
						
					

						Sponge-miRNAs
						
							osa-miR528-3p 						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						leaf senescence
					

			
		

Functional Information
Coding potential	Y
Potential coding position	10408295-10405685(-) 10405914-10408617(-) 10405748-10408664(-)
Potential amino acid sequence	MISRSTSSTNQEGSTLPLVQGNIEFRNVYFSYLSRPEIPILSGFFLTVPARKTVALVGRNGSGK SSIIPLMERFYDPTLGEVLLDGENIKNLKVEWLRSQIGLVTQEPALLSLSIRENIAYGRSATFD QIEEAAKTAHAHGFISSLEKGYETQVGRAGMALSDEQKIKISIARAVLSNPSILLLDEVTGGLD FEAEKAVQEALDVLMLGRSTIIIARRLSLIKNADYIAVMEEGHLVEMGTHDELLNLDGLYAELL RCEEATKLPKRMPTKNGKERKSLQIEDLSASQSFQESSSPKMAKSPSLQRTHGMLQFWRSDTNK NSHDSPKDQSPPSEQTIDNGIPLVATERVPSIKRQDSFEMKLPDLPKVDIHPIQRQSSKNSEPD SPISPLLTSDPKNERSHSQTFSRPQSERDDTSSEQSEPEELQHHKPPSFWRLAALSIAEWPYAL LGTIGAAIFGSFNPLLAYTIALIVSAYYRIDVSDMHHEVNRWCLFIVGMGVITVLVNWLQHFYF GIMGEKMTERIRRMMFSAILRNEVGWFDKEENSADTLSMRLANDATFVRAAFSNRLSIFIQDTA AVSVALLIGMLLGWRVALVALATLPVLVISAIAQAIAYIRTLYAFTNETLAKYSYATSLQATLR YGILISLVQGIGLGFTYGLAICSCALQLWVGRHLIARGKADGGQVVVALFSVILSGLGLNQAAT NFYSFEQGRIAAYRLYEMISRSTSSTNQEGSTLPLVQGNIEFRNVYFSYLSRPEIPILSGFFLT VPARKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKVEWLRSQIGLVTQEPALL SLSIRENIAYGRSATFDQIEEAAKTAHAHGFISSLEKGYETQVGRAGMALSDEQKIKISIARAV LSNPSILLLDEVTGGLDFEAEKAVQEALDVLMLGRSTIIIARRLSLIKNADYIAVMEEGHLVEM GTHDELLNLDGLYAELLRCEEATKLPKRMPTKNGKERKSLQIEDLSASQSFQESSSPKMAKSPS LQRTHGMLQFWRSDTNKNSHDSPKDQSPPSEQTIDNGIPLVATERVPSIKRQDSFEMKLPDLPK VDIHPIQRQSSKNSEPDSPISPLLTSDPKNERSHSQTFSRPQSERDDTSSEQSEPEELQHHKPP SFWRLAALSIAEWPYALLGTIGAAIFGSFNPLLAYTIALIVSAYYRIDVSDMHHEVNRWCLFIV GMGVITVLVNWLQHFYFGIMGEKMTERIRRMMFSAILRNEVGWFDKEENSADTLSMRLANDATF VRAAFSNRLSIFIQDTAAVSVALLIGMLLGWRVALVALATLPVLVISAIAQAIAYIRTLYAFTN ETLAKYSYATSLQATLRYGILISLVQGIGLGFTYGLAICSCALQLWVGRHLIARGKADGGQVVV ALFSVILSGLGLNQAATNFYSFEQGRIAAYRLYEMISRSTSSTNQEGSTLPLVQGNIEFRNVYF SYLSRPEIPILSGFFLTVPARKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKV EWLRSQIGLVTQEPALLSLSIRENIAYGRSATFDQIEEAAKTAHAHGFISSLEKGYETQVGRAG MALSDEQKIKISIARAVLSNPSILLLDEVTGGLDFEAEKAVQEALDVLMLGRSTIIIARRLSLI KNADYIAVMEEGHLVEMGTHDELLNLDGLYAELLRCEEATKLPKRMPTKNGKERKSLQIEDLSA SQSFQESSSPKMAKSPSLQRTHGMLQFWRSDTNKNSHDSPKDQSPPSEQTIDNGIPLVATERVP SIKRQDSFEMKLPDLPKVDIHPIQRQSSKNSEPDSPISPLLTSDPKNERSHSQTFSRPQSERDD TSSEQSEPEELQHHKPPSFWRLAALSIAEWPYALLGTIGAAIFGSFNPLLAYTIALIVSAYYRI DVSDMHHEVNRWCLFIVGMGVITVLVNWLQHFYFGIMGEKMTERIRRMMFSAILRNEVGWFDKE ENSADTLSMRLANDATFVRAAFSNRLSIFIQDTAAVSVALLIGMLLGWRVALVALATLPVLVIS AIAQAIAYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGIGLGFTYGLAICSCALQLWV GRHLIARGKADGGQVVVALFSVILSGLGLNQAATNFYSFEQGRIAAYRLYEMISRSTSSTNQEG STLPLVQGNIEFRNVYFSYLSRPEIPILSGFFLTVPARKTVALVGRNGSGKSSIIPLMERFYDP TLGEVLLDGENIKNLKVEWLRSQIGLVTQEPALLSLSIRENIAYGRSATFDQIEEAAKTAHAHG FISSLEKGYETQVGRAGMALSDEQKIKISIARAVLSNPSILLLDEVTGGLDFEAEKAVQEALDV LMLGRSTIIIARRLSLIKNADYIAVMEEGHLVEMGTHDELLNLDGLYAELLRCEEATKLPKRMP TKNGKERKSLQIEDLSASQSFQESSSPKMAKSPSLQRTHGMLQFWRSDTNKNSHDSPKDQSPPS EQTIDNGIPLVATERVPSIKRQDSFEMKLPDLPKVDIHPIQRQSSKNSEPDSPISPLLTSDPKN ERSHSQTFSRPQSERDDTSSEQSEPEELQHHKPPSFWRLAALSIAEWPYALLGTIGAAIFGSFN PLLAYTIALIVSAYYRIDVSDMHHEVNRWCLFIVGMGVITVLVNWLQHFYFGIMGEKMTERIRR MMFSAILRNEVGWFDKEENSADTLSMRLANDATFVRAAFSNRLSIFIQDTAAVSVALLIGMLLG WRVALVALATLPVLVISAIAQ(-) MKLDGLTKRRTVLIHYPCAWQMMLHLSVPHSVIAFPYSYKTPLQFQWLFLLECCWDGGLHLLLL QLYLFLSSLLLLRPLHTSGRYMLLQMKLWQSTHMLRLFKQL(-) MAGCTCCSCNFTCSCHLCYCSGHCIHQDAICFYK(-)
Sponge-miRNAs	osa-miR528-3p
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	leaf senescence

			
						 Other Information
					
						References
						Huang et al., 2021

circRNA

Detail information of BGIOSGA010981_circ_g.2

Address

Any questions?

Supported by