Plant Circular RNA Database

Detail information of Os03g0280000_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os03g0280000_circ_g.1
					
						ID in PlantcircBase
						osa_circ_019188
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 9559913-9562932  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						KNIFE, PcircRNA_finder
					
						Parent gene
						
							Os03g0280000						
					
						Parent gene annotation
						
							Similar to MDR-like ABC transporter. (Os03t0280000-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0280000_circ_g.2 Os03g0280000_circ_g.3 						
					
						Support reads
						6
					
						Tissues
						seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0280000-01:6

General Information
CircRNA Name	Os03g0280000_circ_g.1
ID in PlantcircBase	osa_circ_019188
Alias	NA
Organism	Oryza sativa
Position	chr3: 9559913-9562932 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	KNIFE, PcircRNA_finder
Parent gene	Os03g0280000
Parent gene annotation	Similar to MDR-like ABC transporter. (Os03t0280000-01)
Parent gene strand	-
Alternative splicing	Os03g0280000_circ_g.2 Os03g0280000_circ_g.3
Support reads	6
Tissues	seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0280000-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATATTCCATATCTCAGAGTTGCTTGAAGAGACGTAGCATATGAGTACTTTGCCAGAGTTTCATT
TGTAAAAGCATATAGCGTCCTGATGTATGCAATGGCctgagcaatagcagagatgacaagaaca
ggtaaagttgcaagagcaacaagtgcaacccgccatcccaacagcattccaataagaagagcca
ctgaaact

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 2163
Transcript exons: 9559913-9560154,9560268-9561055,9561507-9561847,9561984-
9562204,9562286-9562596,9562673-9562932
CTGAGCAATAGCAGAGATGACAAGAACAGGTAAAGTTGCAAGAGCAACAAGTGCAACCCGCCAT
CCCAACAGCATTCCAATAAGAAGAGCCACTGAAACTGCAGCGGTGTCTTGTATGAATATGGAAA
GGCGATTACTGAATGCGGCACGGACAAATGTAGCATCATTTGCCAAGCGCATGGATAGTGTATC
AGCACTGTTCTCCTCTTTGTCAAACCATCCAACTTCATTGCGCAGAATTGCAGAGAACATCATT
CTTCTTATGCGCTCGGTCATCTTCTCTCCCATTATTCCAAAATAGAAATGTTGCAACCAGTTGA
CCAGCACTGTAATAACACCCATGCCTACTATGAATAAGCACCACCTGTTCACTTCATGGTGCAT
GTCGCTAACATCTATTCGGTAATATGCTGACACTATTAGTGCTATTGTGTAAGCAAGCAGTGGA
TTGAAGGAACCAAATATAGCCGCACCGATTGTGCCTAAAAGTGCATAGGGCCATTCAGCAATAC
TAAGTGCTGCAAGTCTCCAAAAGGATGGAGGTTTATGGTGTTGCAACTCTTCTGGTTCACTCTG
TTCAGAACTTGTATCATCCCGTTCACTCTGCGGCCTACTAAAAGTTTGTGAATGTGATCGCTCG
TTCTTTGGATCAGAAGTTAAGAGAGGAGATATAGGTGAGTCAGGTTCTGAATTTTTTGAAGACT
GTCGTTGAATGGGATGGATGTCAACTTTTGGAAGATCGGGCAATTTCATTTCAAAACTATCCTG
TCTCTTGATGGATGGCACTCTCTCGGTTGCAACCAAAGGTATCCCGTTGTCTATAGTTTGTTCT
GAAGGTGGGCTCTGATCCTTCGGGGAATCATGAGAGTTTTTGTTTGTGTCTGATCGCCAAAACT
GAAGCATTCCATGTGTTCTTTGAAGAGAAGGTGATTTGGCCATCTTGGGAGAGGATGATTCTTG
AAAACTTTGGCTGGCCGACAGATCCTCAATTTGGAGTGACTTACGCTCCTTGCCATTCTTGGTT
GGCATCCTCTTGGGAAGCTTTGTTGCTTCCTCACACCTTAAAAGCTCAGCATAAAGGCCATCCA
AGTTCAGGAGTTCATCATGTGTCCCCATTTCAACAAGATGTCCCTCCTCCATCACAGCTATGTA
ATCAGCATTTTTAATGAGGCTGAGACGCCGAGCTATTATAATGGTTGACCTTCCCAACATGAGA
ACATCTAATGCTTCTTGCACAGCTTTTTCAGCTTCAAAATCAAGCCCTCCTGTGACCTCATCAA
GCAAAAGAATTGAAGGGTTTGAAAGCACGGCCCGGGCAATAGAAATTTTGATCTTTTGTTCATC
ACTCAGGGCCATACCAGCTCGACCCACCTGGGTTTCATATCCCTTTTCAAGTGAACTAATGAAC
CCATGGGCATGTGCTGTCTTAGCTGCCTCTTCTATCTGATCAAAGGTAGCAGATCTTCCGTAAG
CAATATTTTCCCGAATGCTCAAACTCAACAATGCGGGTTCTTGGGTCACTAGACCAATTTGGCT
TCTCAACCATTCTACTTTCAAATTTTTTATATTTTCCCCATCCAAAAGTACTTCTCCTAAGGTT
GGATCATAGAATCTCTCCATTAGAGGAATTATGCTACTTTTCCCTGAGCCGTTTCTACCAACAA
GTGCAACAGTTTTTCTGGCAGGTACAGTGAGAAAGAAACCACTTAAAATTGGAATTTCAGGCCG
GGAGAGATAACTAAAATACACATTCCTGAATTCAATGTTCCCTTGCACTAGAGGCAAGGTGGAG
CCTTCTTGATTGGTGCTGGAAGTTGAACGGCTTATCATCTCATACAGTCTATAAGCAGCAATAC
GTCCTTGTTCAAATGAATAGAAGTTCGTAGCTGCTTGGTTCAAACCAAGGCCACTTAGAATTAC
GGAGAACAAAGCTACCACAACTTGACCACCATCAGCTTTTCCCCGAGCAATCAGGTGCCTTCCA
ACCCAAAGTTGCAGAGCACAAGAACAAATGGCAAGCCCATAAGTAAATCCAAGGCCAATCCCTT
GCACAAGGCTTATCAATATTCCATATCTCAGAGTTGCTTGAAGAGACGTAGCATATGAGTACTT
TGCCAGAGTTTCATTTGTAAAAGCATATAGCGTCCTGATGTATGCAATGGC
						
					

						Genomic sequence
						
							CTGAGCAATAGCAGAGATGACAAGAACAGGTAAAGTTGCAAGAGCAACAAGTGCAACCCGCCAT
CCCAACAGCATTCCAATAAGAAGAGCCACTGAAACTGCAGCGGTGTCTTGTATGAATATGGAAA
GGCGATTACTGAATGCGGCACGGACAAATGTAGCATCATTTGCCAAGCGCATGGATAGTGTATC
AGCACTGTTCTCCTCTTTGTCAAACCATCCAACTTCATTGCGCAGAATTGCTGTGAAGAAATAT
AAAATCAGTGTGGGTTGTGGAGGTAAAAAAAACTCAACGTCGCAGCAGATGCAATAAAAGTAAG
AGGCTTGTATATGTACATATGCACATGGAAATTACCAGAGAACATCATTCTTCTTATGCGCTCG
GTCATCTTCTCTCCCATTATTCCAAAATAGAAATGTTGCAACCAGTTGACCAGCACTGTAATAA
CACCCATGCCTACTATGAATAAGCACCACCTGTTCACTTCATGGTGCATGTCGCTAACATCTAT
TCGGTAATATGCTGACACTATTAGTGCTATTGTGTAAGCAAGCAGTGGATTGAAGGAACCAAAT
ATAGCCGCACCGATTGTGCCTAAAAGTGCATAGGGCCATTCAGCAATACTAAGTGCTGCAAGTC
TCCAAAAGGATGGAGGTTTATGGTGTTGCAACTCTTCTGGTTCACTCTGTTCAGAACTTGTATC
ATCCCGTTCACTCTGCGGCCTACTAAAAGTTTGTGAATGTGATCGCTCGTTCTTTGGATCAGAA
GTTAAGAGAGGAGATATAGGTGAGTCAGGTTCTGAATTTTTTGAAGACTGTCGTTGAATGGGAT
GGATGTCAACTTTTGGAAGATCGGGCAATTTCATTTCAAAACTATCCTGTCTCTTGATGGATGG
CACTCTCTCGGTTGCAACCAAAGGTATCCCGTTGTCTATAGTTTGTTCTGAAGGTGGGCTCTGA
TCCTTCGGGGAATCATGAGAGTTTTTGTTTGTGTCTGATCGCCAAAACTGAAGCATTCCATGTG
TTCTTTGAAGAGAAGGTGATTTGGCCATCTTGGGAGAGGATGATTCTTGAAAACTTTGGCTGGC
CGACAGATCCTCAATTTGGAGTGACTTACGCTCCTTGCCATTCTTGGTTGGCATCCTGACAAAG
ATCAAGAAGCATTAGTAAGCCAGCTCTGACTGAATCATGCAAATTAGACATGCCTAGAGCAAAG
TCAGCACAAGGTTAACTGATATTTGTTCTGAGCAGCATATTTGTGCAGGATGCTTTCAACATTC
ATAACATCATATAATGTTAGAACATGTTGTATGCACATTGAGTTTCAAGCATGAACTAATGCAC
ACAAAATCCTAAGCCTTATGCAGCTTAAGAAAGATGGCACTCTTCAATAATTAGTATTCTCTGT
CACGTCTAAGCTAACTCAGGACCTTTGGTTATGTTCCAATAGTAGGATATCGGACAATTGATAT
GTTTAATTGTAGCCAAGAGGACAACTATATGGAGAATATATGGACTTCTAACCTAGACCAGAAC
CAACTTTGTACTGAACATAAACTAGCGCGGTATTATCCAGAGGAAAAATTATCTTTACCTCTTG
GGAAGCTTTGTTGCTTCCTCACACCTTAAAAGCTCAGCATAAAGGCCATCCAAGTTCAGGAGTT
CATCATGTGTCCCCATTTCAACAAGATGTCCCTCCTCCATCACAGCTATGTAATCAGCATTTTT
AATGAGGCTGAGACGCCGAGCTATTATAATGGTTGACCTTCCCAACATGAGAACATCTAATGCT
TCTTGCACAGCTTTTTCAGCTTCAAAATCAAGCCCTCCTGTGACCTCATCAAGCAAAAGAATTG
AAGGGTTTGAAAGCACGGCCCGGGCAATAGAAATTTTGATCTTTTGTTCATCACTCAGGGCCAT
ACCAGCTCGACCCACCTAGGAAGGTACAAAAGAATAAATGGTTAAGAAATGAAACAAACTCGCC
ATGCTAACCAGCCTACAATCCTAGAACGTTTCTTAAAGAACGCCCTGTAACCTACACAGCTACA
CCATGATATGGTACTGCTGTTACCTGGGTTTCATATCCCTTTTCAAGTGAACTAATGAACCCAT
GGGCATGTGCTGTCTTAGCTGCCTCTTCTATCTGATCAAAGGTAGCAGATCTTCCGTAAGCAAT
ATTTTCCCGAATGCTCAAACTCAACAATGCGGGTTCTTGGGTCACTAGACCAATTTGGCTTCTC
AACCATTCTACTTTCAAATTTTTTATATTTTCCCCATCCAAAAGTACTTCTCCTGAAATCATTA
AAAAATAGCTTTAGCAAATGGATAAAATGGAATGGGAAAAAAATCAAATATGCATCTTATTGGT
ATTACCTAAGGTTGGATCATAGAATCTCTCCATTAGAGGAATTATGCTACTTTTCCCTGAGCCG
TTTCTACCAACAAGTGCAACAGTTTTTCTGGCAGGTACAGTGAGAAAGAAACCACTTAAAATTG
GAATTTCAGGCCGGGAGAGATAACTAAAATACACATTCCTGAATTCAATGTTCCCTTGCACTAG
AGGCAAGGTGGAGCCTTCTTGATTGGTGCTGGAAGTTGAACGGCTTATCATCTCATACAGTCTA
TAAGCAGCAATACGTCCTTGTTCAAATGAATAGAAGTTCGTAGCTGCTTGGTTCAAACCACTAT
AAATTGGGAAAATATTAGATAAGCCACTAGTCGATGAAAATAGAGGGAAAATTATCTGATTAAG
TTGCTTACAGGCCACTTAGAATTACGGAGAACAAAGCTACCACAACTTGACCACCATCAGCTTT
TCCCCGAGCAATCAGGTGCCTTCCAACCCAAAGTTGCAGAGCACAAGAACAAATGGCAAGCCCA
TAAGTAAATCCAAGGCCAATCCCTTGCACAAGGCTTATCAATATTCCATATCTCAGAGTTGCTT
GAAGAGACGTAGCATATGAGTACTTTGCCAGAGTTTCATTTGTAAAAGCATATAGCGTCCTGAT
GTATGCAATGGC
						
					

			
		

Sequences
Splice junction sequence	ATATTCCATATCTCAGAGTTGCTTGAAGAGACGTAGCATATGAGTACTTTGCCAGAGTTTCATT TGTAAAAGCATATAGCGTCCTGATGTATGCAATGGCctgagcaatagcagagatgacaagaaca ggtaaagttgcaagagcaacaagtgcaacccgccatcccaacagcattccaataagaagagcca ctgaaact
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 2163 Transcript exons: 9559913-9560154,9560268-9561055,9561507-9561847,9561984- 9562204,9562286-9562596,9562673-9562932 CTGAGCAATAGCAGAGATGACAAGAACAGGTAAAGTTGCAAGAGCAACAAGTGCAACCCGCCAT CCCAACAGCATTCCAATAAGAAGAGCCACTGAAACTGCAGCGGTGTCTTGTATGAATATGGAAA GGCGATTACTGAATGCGGCACGGACAAATGTAGCATCATTTGCCAAGCGCATGGATAGTGTATC AGCACTGTTCTCCTCTTTGTCAAACCATCCAACTTCATTGCGCAGAATTGCAGAGAACATCATT CTTCTTATGCGCTCGGTCATCTTCTCTCCCATTATTCCAAAATAGAAATGTTGCAACCAGTTGA CCAGCACTGTAATAACACCCATGCCTACTATGAATAAGCACCACCTGTTCACTTCATGGTGCAT GTCGCTAACATCTATTCGGTAATATGCTGACACTATTAGTGCTATTGTGTAAGCAAGCAGTGGA TTGAAGGAACCAAATATAGCCGCACCGATTGTGCCTAAAAGTGCATAGGGCCATTCAGCAATAC TAAGTGCTGCAAGTCTCCAAAAGGATGGAGGTTTATGGTGTTGCAACTCTTCTGGTTCACTCTG TTCAGAACTTGTATCATCCCGTTCACTCTGCGGCCTACTAAAAGTTTGTGAATGTGATCGCTCG TTCTTTGGATCAGAAGTTAAGAGAGGAGATATAGGTGAGTCAGGTTCTGAATTTTTTGAAGACT GTCGTTGAATGGGATGGATGTCAACTTTTGGAAGATCGGGCAATTTCATTTCAAAACTATCCTG TCTCTTGATGGATGGCACTCTCTCGGTTGCAACCAAAGGTATCCCGTTGTCTATAGTTTGTTCT GAAGGTGGGCTCTGATCCTTCGGGGAATCATGAGAGTTTTTGTTTGTGTCTGATCGCCAAAACT GAAGCATTCCATGTGTTCTTTGAAGAGAAGGTGATTTGGCCATCTTGGGAGAGGATGATTCTTG AAAACTTTGGCTGGCCGACAGATCCTCAATTTGGAGTGACTTACGCTCCTTGCCATTCTTGGTT GGCATCCTCTTGGGAAGCTTTGTTGCTTCCTCACACCTTAAAAGCTCAGCATAAAGGCCATCCA AGTTCAGGAGTTCATCATGTGTCCCCATTTCAACAAGATGTCCCTCCTCCATCACAGCTATGTA ATCAGCATTTTTAATGAGGCTGAGACGCCGAGCTATTATAATGGTTGACCTTCCCAACATGAGA ACATCTAATGCTTCTTGCACAGCTTTTTCAGCTTCAAAATCAAGCCCTCCTGTGACCTCATCAA GCAAAAGAATTGAAGGGTTTGAAAGCACGGCCCGGGCAATAGAAATTTTGATCTTTTGTTCATC ACTCAGGGCCATACCAGCTCGACCCACCTGGGTTTCATATCCCTTTTCAAGTGAACTAATGAAC CCATGGGCATGTGCTGTCTTAGCTGCCTCTTCTATCTGATCAAAGGTAGCAGATCTTCCGTAAG CAATATTTTCCCGAATGCTCAAACTCAACAATGCGGGTTCTTGGGTCACTAGACCAATTTGGCT TCTCAACCATTCTACTTTCAAATTTTTTATATTTTCCCCATCCAAAAGTACTTCTCCTAAGGTT GGATCATAGAATCTCTCCATTAGAGGAATTATGCTACTTTTCCCTGAGCCGTTTCTACCAACAA GTGCAACAGTTTTTCTGGCAGGTACAGTGAGAAAGAAACCACTTAAAATTGGAATTTCAGGCCG GGAGAGATAACTAAAATACACATTCCTGAATTCAATGTTCCCTTGCACTAGAGGCAAGGTGGAG CCTTCTTGATTGGTGCTGGAAGTTGAACGGCTTATCATCTCATACAGTCTATAAGCAGCAATAC GTCCTTGTTCAAATGAATAGAAGTTCGTAGCTGCTTGGTTCAAACCAAGGCCACTTAGAATTAC GGAGAACAAAGCTACCACAACTTGACCACCATCAGCTTTTCCCCGAGCAATCAGGTGCCTTCCA ACCCAAAGTTGCAGAGCACAAGAACAAATGGCAAGCCCATAAGTAAATCCAAGGCCAATCCCTT GCACAAGGCTTATCAATATTCCATATCTCAGAGTTGCTTGAAGAGACGTAGCATATGAGTACTT TGCCAGAGTTTCATTTGTAAAAGCATATAGCGTCCTGATGTATGCAATGGC
Genomic sequence	CTGAGCAATAGCAGAGATGACAAGAACAGGTAAAGTTGCAAGAGCAACAAGTGCAACCCGCCAT CCCAACAGCATTCCAATAAGAAGAGCCACTGAAACTGCAGCGGTGTCTTGTATGAATATGGAAA GGCGATTACTGAATGCGGCACGGACAAATGTAGCATCATTTGCCAAGCGCATGGATAGTGTATC AGCACTGTTCTCCTCTTTGTCAAACCATCCAACTTCATTGCGCAGAATTGCTGTGAAGAAATAT AAAATCAGTGTGGGTTGTGGAGGTAAAAAAAACTCAACGTCGCAGCAGATGCAATAAAAGTAAG AGGCTTGTATATGTACATATGCACATGGAAATTACCAGAGAACATCATTCTTCTTATGCGCTCG GTCATCTTCTCTCCCATTATTCCAAAATAGAAATGTTGCAACCAGTTGACCAGCACTGTAATAA CACCCATGCCTACTATGAATAAGCACCACCTGTTCACTTCATGGTGCATGTCGCTAACATCTAT TCGGTAATATGCTGACACTATTAGTGCTATTGTGTAAGCAAGCAGTGGATTGAAGGAACCAAAT ATAGCCGCACCGATTGTGCCTAAAAGTGCATAGGGCCATTCAGCAATACTAAGTGCTGCAAGTC TCCAAAAGGATGGAGGTTTATGGTGTTGCAACTCTTCTGGTTCACTCTGTTCAGAACTTGTATC ATCCCGTTCACTCTGCGGCCTACTAAAAGTTTGTGAATGTGATCGCTCGTTCTTTGGATCAGAA GTTAAGAGAGGAGATATAGGTGAGTCAGGTTCTGAATTTTTTGAAGACTGTCGTTGAATGGGAT GGATGTCAACTTTTGGAAGATCGGGCAATTTCATTTCAAAACTATCCTGTCTCTTGATGGATGG CACTCTCTCGGTTGCAACCAAAGGTATCCCGTTGTCTATAGTTTGTTCTGAAGGTGGGCTCTGA TCCTTCGGGGAATCATGAGAGTTTTTGTTTGTGTCTGATCGCCAAAACTGAAGCATTCCATGTG TTCTTTGAAGAGAAGGTGATTTGGCCATCTTGGGAGAGGATGATTCTTGAAAACTTTGGCTGGC CGACAGATCCTCAATTTGGAGTGACTTACGCTCCTTGCCATTCTTGGTTGGCATCCTGACAAAG ATCAAGAAGCATTAGTAAGCCAGCTCTGACTGAATCATGCAAATTAGACATGCCTAGAGCAAAG TCAGCACAAGGTTAACTGATATTTGTTCTGAGCAGCATATTTGTGCAGGATGCTTTCAACATTC ATAACATCATATAATGTTAGAACATGTTGTATGCACATTGAGTTTCAAGCATGAACTAATGCAC ACAAAATCCTAAGCCTTATGCAGCTTAAGAAAGATGGCACTCTTCAATAATTAGTATTCTCTGT CACGTCTAAGCTAACTCAGGACCTTTGGTTATGTTCCAATAGTAGGATATCGGACAATTGATAT GTTTAATTGTAGCCAAGAGGACAACTATATGGAGAATATATGGACTTCTAACCTAGACCAGAAC CAACTTTGTACTGAACATAAACTAGCGCGGTATTATCCAGAGGAAAAATTATCTTTACCTCTTG GGAAGCTTTGTTGCTTCCTCACACCTTAAAAGCTCAGCATAAAGGCCATCCAAGTTCAGGAGTT CATCATGTGTCCCCATTTCAACAAGATGTCCCTCCTCCATCACAGCTATGTAATCAGCATTTTT AATGAGGCTGAGACGCCGAGCTATTATAATGGTTGACCTTCCCAACATGAGAACATCTAATGCT TCTTGCACAGCTTTTTCAGCTTCAAAATCAAGCCCTCCTGTGACCTCATCAAGCAAAAGAATTG AAGGGTTTGAAAGCACGGCCCGGGCAATAGAAATTTTGATCTTTTGTTCATCACTCAGGGCCAT ACCAGCTCGACCCACCTAGGAAGGTACAAAAGAATAAATGGTTAAGAAATGAAACAAACTCGCC ATGCTAACCAGCCTACAATCCTAGAACGTTTCTTAAAGAACGCCCTGTAACCTACACAGCTACA CCATGATATGGTACTGCTGTTACCTGGGTTTCATATCCCTTTTCAAGTGAACTAATGAACCCAT GGGCATGTGCTGTCTTAGCTGCCTCTTCTATCTGATCAAAGGTAGCAGATCTTCCGTAAGCAAT ATTTTCCCGAATGCTCAAACTCAACAATGCGGGTTCTTGGGTCACTAGACCAATTTGGCTTCTC AACCATTCTACTTTCAAATTTTTTATATTTTCCCCATCCAAAAGTACTTCTCCTGAAATCATTA AAAAATAGCTTTAGCAAATGGATAAAATGGAATGGGAAAAAAATCAAATATGCATCTTATTGGT ATTACCTAAGGTTGGATCATAGAATCTCTCCATTAGAGGAATTATGCTACTTTTCCCTGAGCCG TTTCTACCAACAAGTGCAACAGTTTTTCTGGCAGGTACAGTGAGAAAGAAACCACTTAAAATTG GAATTTCAGGCCGGGAGAGATAACTAAAATACACATTCCTGAATTCAATGTTCCCTTGCACTAG AGGCAAGGTGGAGCCTTCTTGATTGGTGCTGGAAGTTGAACGGCTTATCATCTCATACAGTCTA TAAGCAGCAATACGTCCTTGTTCAAATGAATAGAAGTTCGTAGCTGCTTGGTTCAAACCACTAT AAATTGGGAAAATATTAGATAAGCCACTAGTCGATGAAAATAGAGGGAAAATTATCTGATTAAG TTGCTTACAGGCCACTTAGAATTACGGAGAACAAAGCTACCACAACTTGACCACCATCAGCTTT TCCCCGAGCAATCAGGTGCCTTCCAACCCAAAGTTGCAGAGCACAAGAACAAATGGCAAGCCCA TAAGTAAATCCAAGGCCAATCCCTTGCACAAGGCTTATCAATATTCCATATCTCAGAGTTGCTT GAAGAGACGTAGCATATGAGTACTTTGCCAGAGTTTCATTTGTAAAAGCATATAGCGTCCTGAT GTATGCAATGGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_004728* 						
					
						PMCS
						0.327603946

Conservation Information
Conserved circRNAs	osi_circ_004728*
PMCS	0.327603946

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							9562525-9559915(-)
9560144-9562847(-)
9559978-9562894(-)
						
					

						Potential amino acid sequence
						
							MISRSTSSTNQEGSTLPLVQGNIEFRNVYFSYLSRPEIPILSGFFLTVPARKTVALVGRNGSGK
SSIIPLMERFYDPTLGEVLLDGENIKNLKVEWLRSQIGLVTQEPALLSLSIRENIAYGRSATFD
QIEEAAKTAHAHGFISSLEKGYETQVGRAGMALSDEQKIKISIARAVLSNPSILLLDEVTGGLD
FEAEKAVQEALDVLMLGRSTIIIARRLSLIKNADYIAVMEEGHLVEMGTHDELLNLDGLYAELL
RCEEATKLPKRMPTKNGKERKSLQIEDLSASQSFQESSSPKMAKSPSLQRTHGMLQFWRSDTNK
NSHDSPKDQSPPSEQTIDNGIPLVATERVPSIKRQDSFEMKLPDLPKVDIHPIQRQSSKNSEPD
SPISPLLTSDPKNERSHSQTFSRPQSERDDTSSEQSEPEELQHHKPPSFWRLAALSIAEWPYAL
LGTIGAAIFGSFNPLLAYTIALIVSAYYRIDVSDMHHEVNRWCLFIVGMGVITVLVNWLQHFYF
GIMGEKMTERIRRMMFSAILRNEVGWFDKEENSADTLSMRLANDATFVRAAFSNRLSIFIQDTA
AVSVALLIGMLLGWRVALVALATLPVLVISAIAQAIAYIRTLYAFTNETLAKYSYATSLQATLR
YGILISLVQGIGLGFTYGLAICSCALQLWVGRHLIARGKADGGQVVVALFSVILSGLGLNQAAT
NFYSFEQGRIAAYRLYEMISRSTSSTNQEGSTLPLVQGNIEFRNVYFSYLSRPEIPILSGFFLT
VPARKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKVEWLRSQIGLVTQEPALL
SLSIRENIAYGRSATFDQIEEAAKTAHAHGFISSLEKGYETQVGRAGMALSDEQKIKISIARAV
LSNPSILLLDEVTGGLDFEAEKAVQEALDVLMLGRSTIIIARRLSLIKNADYIAVMEEGHLVEM
GTHDELLNLDGLYAELLRCEEATKLPKRMPTKNGKERKSLQIEDLSASQSFQESSSPKMAKSPS
LQRTHGMLQFWRSDTNKNSHDSPKDQSPPSEQTIDNGIPLVATERVPSIKRQDSFEMKLPDLPK
VDIHPIQRQSSKNSEPDSPISPLLTSDPKNERSHSQTFSRPQSERDDTSSEQSEPEELQHHKPP
SFWRLAALSIAEWPYALLGTIGAAIFGSFNPLLAYTIALIVSAYYRIDVSDMHHEVNRWCLFIV
GMGVITVLVNWLQHFYFGIMGEKMTERIRRMMFSAILRNEVGWFDKEENSADTLSMRLANDATF
VRAAFSNRLSIFIQDTAAVSVALLIGMLLGWRVALVALATLPVLVISAIAQAIAYIRTLYAFTN
ETLAKYSYATSLQATLRYGILISLVQGIGLGFTYGLAICSCALQLWVGRHLIARGKADGGQVVV
ALFSVILSGLGLNQAATNFYSFEQGRIAAYRLYEMISRSTSSTNQEGSTLPLVQGNIEFRNVYF
SYLSRPEIPILSGFFLTVPARKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKV
EWLRSQIGLVTQEPALLSLSIRENIAYGRSATFDQIEEAAKTAHAHGFISSLEKGYETQVGRAG
MALSDEQKIKISIARAVLSNPSILLLDEVTGGLDFEAEKAVQEALDVLMLGRSTIIIARRLSLI
KNADYIAVMEEGHLVEMGTHDELLNLDGLYAELLRCEEATKLPKRMPTKNGKERKSLQIEDLSA
SQSFQESSSPKMAKSPSLQRTHGMLQFWRSDTNKNSHDSPKDQSPPSEQTIDNGIPLVATERVP
SIKRQDSFEMKLPDLPKVDIHPIQRQSSKNSEPDSPISPLLTSDPKNERSHSQTFSRPQSERDD
TSSEQSEPEELQHHKPPSFWRLAALSIAEWPYALLGTIGAAIFGSFNPLLAYTIALIVSAYYRI
DVSDMHHEVNRWCLFIVGMGVITVLVNWLQHFYFGIMGEKMTERIRRMMFSAILRNEVGWFDKE
ENSADTLSMRLANDATFVRAAFSNRLSIFIQDTAAVSVALLIGMLLGWRVALVALATLPVLVIS
AIAQAIAYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGIGLGFTYGLAICSCALQLWV
GRHLIARGKADGGQVVVALFSVILSGLGLNQAATNFYSFEQGRIAAYRLYEMISRSTSSTNQEG
STLPLVQGNIEFRNVYFSYLSRPEIPILSGFFLTVPARKTVALVGRNGSGKSSIIPLMERFYDP
TLGEVLLDGENIKNLKVEWLRSQIGLVTQEPALLSLSIRENIAYGRSATFDQIEEAAKTAHAHG
FISSLEKGYETQVGRAGMALSDEQKIKISIARAVLSNPSILLLDEVTGGLDFEAEKAVQEALDV
LMLGRSTIIIARRLSLIKNADYIAVMEEGHLVEMGTHDELLNLDGLYAELLRCEEATKLPKRMP
TKNGKERKSLQIEDLSASQSFQESSSPKMAKSPSLQRTHGMLQFWRSDTNKNSHDSPKDQSPPS
EQTIDNGIPLVATERVPSIKRQDSFEMKLPDLPKVDIHPIQRQSSKNSEPDSPISPLLTSDPKN
ERSHSQTFSRPQSERDDTSSEQSEPEELQHHKPPSFWRLAALSIAEWPYALLGTIGAAIFGSFN
PLLAYTIALIVSAYYRIDVSDMHHEVNRWCLFIVGMGVITVLVNWLQHFYFGIMGEKMTERIRR
MMFSAILRNEVGWFDKEENSADTLSMRLANDATFVRAAFSNRLSIFIQDTAAVSVALLIGMLLG
WRVALVALATLPVLVISAIAQ(-)
MKLDGLTKRRTVLIHYPCAWQMMLHLSVPHSVIAFPYSYKTPLQFQWLFLLECCWDGGLHLLLL
QLYLFLSSLLLLRPLHTSGRYMLLQMKLWQSTHMLRLFKQL*(-)
MAGCTCCSCNFTCSCHLCYCSGHCIHQDAICFYK*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	9562525-9559915(-) 9560144-9562847(-) 9559978-9562894(-)
Potential amino acid sequence	MISRSTSSTNQEGSTLPLVQGNIEFRNVYFSYLSRPEIPILSGFFLTVPARKTVALVGRNGSGK SSIIPLMERFYDPTLGEVLLDGENIKNLKVEWLRSQIGLVTQEPALLSLSIRENIAYGRSATFD QIEEAAKTAHAHGFISSLEKGYETQVGRAGMALSDEQKIKISIARAVLSNPSILLLDEVTGGLD FEAEKAVQEALDVLMLGRSTIIIARRLSLIKNADYIAVMEEGHLVEMGTHDELLNLDGLYAELL RCEEATKLPKRMPTKNGKERKSLQIEDLSASQSFQESSSPKMAKSPSLQRTHGMLQFWRSDTNK NSHDSPKDQSPPSEQTIDNGIPLVATERVPSIKRQDSFEMKLPDLPKVDIHPIQRQSSKNSEPD SPISPLLTSDPKNERSHSQTFSRPQSERDDTSSEQSEPEELQHHKPPSFWRLAALSIAEWPYAL LGTIGAAIFGSFNPLLAYTIALIVSAYYRIDVSDMHHEVNRWCLFIVGMGVITVLVNWLQHFYF GIMGEKMTERIRRMMFSAILRNEVGWFDKEENSADTLSMRLANDATFVRAAFSNRLSIFIQDTA AVSVALLIGMLLGWRVALVALATLPVLVISAIAQAIAYIRTLYAFTNETLAKYSYATSLQATLR YGILISLVQGIGLGFTYGLAICSCALQLWVGRHLIARGKADGGQVVVALFSVILSGLGLNQAAT NFYSFEQGRIAAYRLYEMISRSTSSTNQEGSTLPLVQGNIEFRNVYFSYLSRPEIPILSGFFLT VPARKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKVEWLRSQIGLVTQEPALL SLSIRENIAYGRSATFDQIEEAAKTAHAHGFISSLEKGYETQVGRAGMALSDEQKIKISIARAV LSNPSILLLDEVTGGLDFEAEKAVQEALDVLMLGRSTIIIARRLSLIKNADYIAVMEEGHLVEM GTHDELLNLDGLYAELLRCEEATKLPKRMPTKNGKERKSLQIEDLSASQSFQESSSPKMAKSPS LQRTHGMLQFWRSDTNKNSHDSPKDQSPPSEQTIDNGIPLVATERVPSIKRQDSFEMKLPDLPK VDIHPIQRQSSKNSEPDSPISPLLTSDPKNERSHSQTFSRPQSERDDTSSEQSEPEELQHHKPP SFWRLAALSIAEWPYALLGTIGAAIFGSFNPLLAYTIALIVSAYYRIDVSDMHHEVNRWCLFIV GMGVITVLVNWLQHFYFGIMGEKMTERIRRMMFSAILRNEVGWFDKEENSADTLSMRLANDATF VRAAFSNRLSIFIQDTAAVSVALLIGMLLGWRVALVALATLPVLVISAIAQAIAYIRTLYAFTN ETLAKYSYATSLQATLRYGILISLVQGIGLGFTYGLAICSCALQLWVGRHLIARGKADGGQVVV ALFSVILSGLGLNQAATNFYSFEQGRIAAYRLYEMISRSTSSTNQEGSTLPLVQGNIEFRNVYF SYLSRPEIPILSGFFLTVPARKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKV EWLRSQIGLVTQEPALLSLSIRENIAYGRSATFDQIEEAAKTAHAHGFISSLEKGYETQVGRAG MALSDEQKIKISIARAVLSNPSILLLDEVTGGLDFEAEKAVQEALDVLMLGRSTIIIARRLSLI KNADYIAVMEEGHLVEMGTHDELLNLDGLYAELLRCEEATKLPKRMPTKNGKERKSLQIEDLSA SQSFQESSSPKMAKSPSLQRTHGMLQFWRSDTNKNSHDSPKDQSPPSEQTIDNGIPLVATERVP SIKRQDSFEMKLPDLPKVDIHPIQRQSSKNSEPDSPISPLLTSDPKNERSHSQTFSRPQSERDD TSSEQSEPEELQHHKPPSFWRLAALSIAEWPYALLGTIGAAIFGSFNPLLAYTIALIVSAYYRI DVSDMHHEVNRWCLFIVGMGVITVLVNWLQHFYFGIMGEKMTERIRRMMFSAILRNEVGWFDKE ENSADTLSMRLANDATFVRAAFSNRLSIFIQDTAAVSVALLIGMLLGWRVALVALATLPVLVIS AIAQAIAYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGIGLGFTYGLAICSCALQLWV GRHLIARGKADGGQVVVALFSVILSGLGLNQAATNFYSFEQGRIAAYRLYEMISRSTSSTNQEG STLPLVQGNIEFRNVYFSYLSRPEIPILSGFFLTVPARKTVALVGRNGSGKSSIIPLMERFYDP TLGEVLLDGENIKNLKVEWLRSQIGLVTQEPALLSLSIRENIAYGRSATFDQIEEAAKTAHAHG FISSLEKGYETQVGRAGMALSDEQKIKISIARAVLSNPSILLLDEVTGGLDFEAEKAVQEALDV LMLGRSTIIIARRLSLIKNADYIAVMEEGHLVEMGTHDELLNLDGLYAELLRCEEATKLPKRMP TKNGKERKSLQIEDLSASQSFQESSSPKMAKSPSLQRTHGMLQFWRSDTNKNSHDSPKDQSPPS EQTIDNGIPLVATERVPSIKRQDSFEMKLPDLPKVDIHPIQRQSSKNSEPDSPISPLLTSDPKN ERSHSQTFSRPQSERDDTSSEQSEPEELQHHKPPSFWRLAALSIAEWPYALLGTIGAAIFGSFN PLLAYTIALIVSAYYRIDVSDMHHEVNRWCLFIVGMGVITVLVNWLQHFYFGIMGEKMTERIRR MMFSAILRNEVGWFDKEENSADTLSMRLANDATFVRAAFSNRLSIFIQDTAAVSVALLIGMLLG WRVALVALATLPVLVISAIAQ(-) MKLDGLTKRRTVLIHYPCAWQMMLHLSVPHSVIAFPYSYKTPLQFQWLFLLECCWDGGLHLLLL QLYLFLSSLLLLRPLHTSGRYMLLQMKLWQSTHMLRLFKQL(-) MAGCTCCSCNFTCSCHLCYCSGHCIHQDAICFYK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0280000_circ_g.1

Address

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