Detail information of Os10g0503100_circ_g.1


General Information
CircRNA Name Os10g0503100_circ_g.1
ID in PlantcircBase osa_circ_007572
Alias NA
Organism Oryza sativa
Position chr10: 19199753-19200083  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene Os10g0503100
Parent gene annotation Similar to Transcription factor L2. (Os10t0503100-01)
Parent gene strand -
Alternative splicing Os10g0503100_circ_igg.1
Support reads 1
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0503100-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAAAAATATGAATTCTGGTCCATATGGAAGTTAAAAGAATAAGTTATCTTTAGAAAGACGAT
GAGAATGCGGTACCTGTTCACTGTTTGCCTTTGTACcttctccaatggatacacagtcttcttg
caggcagtacacttgtcctgggttccacagaacacagaggacagcttgctgggaatcttagcct
gtttatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTCCAATGGATACACAGTCTTCTTGCAGGCAGTACACTTGTCCTGGGTTCCACAGAACACA
GAGGACAGCTTGCTGGGAATCTTAGCCTGTTTATCACACAAAAGCAGATTGTATGAGTTGCAAT
CCATGGCAAATTTAAATTGCCTGATGTTGCTGATAGTCCTTTACGGCAAGAGCCATGATTCTTT
CTGGAGGTACCAATGCATTTTCCTTTTCTTTTGCTTAACAACAAAAATATGAATTCTGGTCCAT
ATGGAAGTTAAAAGAATAAGTTATCTTTAGAAAGACGATGAGAATGCGGTACCTGTTCACTGTT
TGCCTTTGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.151055639
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017