Detail information of Os10g0503100_circ_igg.1


General Information
CircRNA Name Os10g0503100_circ_igg.1
ID in PlantcircBase osa_circ_007573
Alias Os_ciR4569
Organism Oryza sativa
Position chr10: 19199753-19201392  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0503100_circ_g.1
Support reads 4
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTATGTCTCACCCAAAGTGTGAAATCTTCCTTTGCTCAGGGCCACAGGCAAGCTACAAGCAAA
TTATTTTTGATCTGGCTTCAGCCCCAAAAATGTATTcttctccaatggatacacagtcttcttg
caggcagtacacttgtcctgggttccacagaacacagaggacagcttgctgggaatcttagcct
gtttatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTCCAATGGATACACAGTCTTCTTGCAGGCAGTACACTTGTCCTGGGTTCCACAGAACACA
GAGGACAGCTTGCTGGGAATCTTAGCCTGTTTATCACACAAAAGCAGATTGTATGAGTTGCAAT
CCATGGCAAATTTAAATTGCCTGATGTTGCTGATAGTCCTTTACGGCAAGAGCCATGATTCTTT
CTGGAGGTACCAATGCATTTTCCTTTTCTTTTGCTTAACAACAAAAATATGAATTCTGGTCCAT
ATGGAAGTTAAAAGAATAAGTTATCTTTAGAAAGACGATGAGAATGCGGTACCTGTTCACTGTT
TGCCTTTGTACCTGAACCACAGGACAAGCAGAATAGTAATAAGATTCTTGTGATTTCATAAAAA
ATAACAGGTAAAGGGTGATGCAGATCAAACATTCAAACATACCTGAGGGGAAGTTCTTCTTGAA
GGTGCCTGTTTCCTTGAATAGCTGCTCAAAATGGGTCTTGCAGTAAAGAACCCCATCCATGGAC
GAATAGCTGCACATCTGGAAATAGAACAATTCACATCAGCTCATGAGTAACATATAATATTTTA
ACATCATGAAGAGCATAAAAAACTGATCATTCACATCAAGGAGTGCAGACACCAAGAAGAGTGC
ATACCGAAAGTGTGCCTTTGCAGTGGCTGCATCTGAAGCAAGACTTGTGGTAGGGAATACTGTC
CGCGGTAAGGAGATCAATGAAATGCACGGTCTTGTCACAAGCATTGCACTTGTCCTGTGTACCA
GAGAACGTCATCTTGGTATTCTCGGTGGGGATGTGCCGAGCAATATGTCAATTTGTTGCTAACA
AGAATTCGCTAGCACAACCCTCCTGATAGAATCAAGATAATGTCTTTGGCTCTCAATCTGCAAC
TGAATAGATGCAGATGAAAGCCAAAGGGAGGGTGTGTGCAAGAAGTTGATGGGAGGCTTTAATA
TGCAATTCTGGAAACCTGATTTGGGAGAGGCTGAAGCTAGGGAAGAAATATAAGAGGCTTGGGT
CTAACTCCACCTCTAAGCCAGAGGAAATGGTCAGAGAGATGAGATTAGATGTGCCACATCACAA
TGCTAACTTTGGAGACTCCTCACATGGTTATAATTTGTGGTTATTCTCCTACAGAAAGTGTTTG
ACTATATTTAGGGTGCAATAATAGTTAGTGACTAACAATAGCCCAAGACATTTACAGAAGAGTT
ATTTAAATGCCATTGTTATCAGCCGGTCATTTTTCTCTTTTGAGGAAGAAGTTGACCAAGCTAT
TCTTAGTGCACCGAGAATAACACAAACAAACAAATGTATAACCATTTGCACACATGATAAAATT
AAACAGCATGCATGTCATTGGCCTTTTAGAGAAATGTGACCTTAAAAAGAATGGTTCTTCACAA
ACAAAGAAAGATGACACATAAGCTTACATAAGAACAAAAGGCACAAGAACAAAAACTAGCTCAT
GGTATGATCCGAACAGACAGTTTCCCAGAGTAACTATTGTATACGAACTGGAATAACAGGGGGG
AAGATGTATGTCTCACCCAAAGTGTGAAATCTTCCTTTGCTCAGGGCCACAGGCAAGCTACAAG
CAAATTATTTTTGATCTGGCTTCAGCCCCAAAAATGTATT
Conservation Information
Conserved circRNAs osi_circ_002890* osi_circ_008577
PMCS 0.253817175
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015