Plant Circular RNA Database

Detail information of GLYMA_11G254100_circ_g.1

			
						 General Information
					
						CircRNA Name
						GLYMA_11G254100_circ_g.1
					
						ID in PlantcircBase
						gma_circ_003144
					
						Alias
						Gm11circRNA321
					
						Organism
						
							Glycine max						
					
						Position
						
							chr11: 34468790-34471329  JBrowse»						
					
						Reference genome
						
							v2.0.38						
					
						Type  
						
							ei-circRNA							
									
						Identification method
						Tophat
					
						Parent gene
						
							GLYMA_11G254100						
					
						Parent gene annotation
						
							hypothetical protein
							
						Parent gene strand
						+
					
						Alternative splicing
						
							GLYMA_11G254100_circ_g.2 						
					
						Support reads
						NA
					
						Tissues
						leaf, stem
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GG-TA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						KRH31561:7
KRH31560:7

General Information
CircRNA Name	GLYMA_11G254100_circ_g.1
ID in PlantcircBase	gma_circ_003144
Alias	Gm11circRNA321
Organism	Glycine max
Position	chr11: 34468790-34471329 JBrowse»
Reference genome	v2.0.38
Type	ei-circRNA
Identification method	Tophat
Parent gene	GLYMA_11G254100
Parent gene annotation	hypothetical protein
Parent gene strand	+
Alternative splicing	GLYMA_11G254100_circ_g.2
Support reads	NA
Tissues	leaf, stem
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GG-TA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	KRH31561:7 KRH31560:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATTCAAAGTCGTAGATTCTGAGACTGATGAAGTTCTTCCACCTGGTTCAAAGGGAATATTAAA
AGTCAGGGGCCCACAATTGATGAAGGGATACTATAAgataaaaaacttaggggatattgtacct
gctgaagttggggatagatttctaagcatgctgccttcctggcatgcatatgaaagagcttgtg
agtatttc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GATAAAAAACTTAGGGGATATTGTACCTGCTGAAGTTGGGGATAGATTTCTAAGCATGCTGCCT
TCCTGGCATGCATATGAAAGAGCTTGTGAGTATTTCATTTTCTCGTGCGGTGTTGAACAAGTAT
ACACAACTGTGAGAAACTTGAAGGTATTATTACTTTAATAATCTGTTTGATTATGGTTTGTCAT
AAAAGACGACACATTGCCTCATGCATTAATATCCTATATTTTCTTTCATTATAGGAGGATTTGG
GACATTATCAACCACATTACTTGATTTCTGTTCCTTTAGTTTATGAAACTTTATATAGGTAAAT
CCTTTTCCAGGAAGAGGAGTGTTAGGAACACGCTCTTTCAAACACACTCTCACTAATTGTATTT
CATGTCAACTGTGAATTGCATTTATTATTCTTGATTCCTGTAGTGGGATCCAGAAGCAGATATC
TACAAGCTCCCTTGTTAGAAAGCTTGTTGCACTCACATTCATAAGGGTCAGCTTAAGGTACATG
GAGTGTAAGCGTATTTATGAGGTATGGTCATCTGCTCTTTCTGTAGGTCTCTTAAGTGTTAGAA
ACATTCCCAAAATCATCATTCTGTCTTAAAACCTGTTTTCTATGCTTTGGTAAAGGCTTATTTC
ATCCAATTTTGTTCTTAAAAAAATAAGAGAAAAAATAGGGGCTGTAAAAGAAATTGGACTCGAT
GACATTTTGTTGATCTGATGTGATACCATTGTGTCACAACAAATTGGGTCTGTTTGGTAAGATG
GGTCATACTCCAAAGGGATAGACCCAATCTGTCAATTGCAGAATCCTATCTTACTATCAAATAT
TCAAATTTAGAGTAAAACCATGAATCTGTCCTTGAGAAATTTAGGGCGGGTTACCTTAGTCCCC
TAATAATACCAAAATCCCTCATTGGTCCCTAAAAAGGATCCATATGACCCACATTTTGTGATTC
TAGGTACTAGAATTCTTAGAATCTTAGAATGTGAGTTCAGGCCTAACTTAACCCCAAAAGTTAG
TTCAAGGAGTGAGGGTTGCCTCTCACTTATATGTTCTATCTTAGCTTTATCCTTATACTCTGAT
ACCATCTTAGAATGTGAGTTTAGGCCTAACTCAACCCCAAAAGCTAGCTCAAGAGGTGAGAGTT
GTCTCTCACTTATATATTCTATCTTGGCTTTATCTTTAGCCAATGTGAGACTTGGGTTTTTCCC
AATAAGAATGGAATTTTTATGTTCTTAAGGACTGATATGTACCGTCAGATTTCTCAAGGACAAA
TTTAGGGGTTTACTCTCAAATTTATTTCTGATCACAGTCACACCTCATCTCAGGTTCACTCTTG
ATAATTATTCCATCATTAGCACTTTCCAAATTAGATTAAACAAGTAGATCTGTAAATGGACGTA
GTTCTAATTCTACCCAAACATGTTGCTTTTAATAAATTTTTAATATGTTTGTAGGGTAAATGTC
TAACAAAGGATCAGAAGCCACCGTCCTACCTCCATTCAATTTTGGACTGGTTATGGGCAAGAGT
TGTTGCCACAATATTATTTCCAGTTCATTTACTGGCGAAGATACTGGTCTACCATAAAATTCAT
TCAGCTATTGGAATTTCAAAGGTCTTGTATTCTGAAATATGATCTATAATAAAATGTTTTTCTT
TTTTTTTTGGTGAAAAAATGTTTTGCTCATGATAAGCTAAACCCTCTGGCACTCTGCAGGCTGG
AGTAAGTGGCGGTGGTAGCTTATCTTCTCATGTGGATAGATTTTTTGAGGTCTGATACTTCACA
CATGCAATTCTTGGGCAGGAATTTTCTTTTTGACATTCTACTGACATTTTTTTAAAATCAATAT
ACAGGCTATTGGTGTGAATGTGCAGAATGGATATGGTTTAACTGAAACTTCACCAGTTATTGCT
GCTCGACGGCTTAGTTATAACGTAAGCAGTAGATTATCAACTGCATTAATATTATGCTGAGCTG
AGTATTTTAACATATCAACTGCAGTAAATTATTTGAACTCCTACTGTTTTCTCTCCCTCTACCT
TAGTTTATCTGCTTCTCCCCCCACCCCCCCTTCTTAAAAAGTAAAATAGTAAATTGAGAATAAC
AATTATTTGAGCTTGTTAAGAAAACAAAGGGCTAAATGAGAGTTCTACTTAATCAGCATTTCTT
TTGTTTATAATTATTTTTAAAGTTCATATTTATTTGCAAAAGATACCCATTCTACTTAATCTGT
TAATAGCAAGCACACTGTAAACCTTTTGGTTTTTGTCAAAAGTTTCTATCTAGACCAGATATTC
ATAATAATTACAAAATTTGCATTCTTTTAATTAGTTTGTATTTTGTGTCTGCAAAGAGTAGTGC
TTATATCTGAATGTTATAGATGCAATCTTTTGAAGGTTATTGGGTCTGTTGGCCATCCAATTAA
GCATACAGAATTCAAAGTCGTAGATTCTGAGACTGATGAAGTTCTTCCACCTGGTTCAAAGGGA
ATATTAAAAGTCAGGGGCCCACAATTGATGAAGGGATACTATAA
						
					

			
		

Sequences
Splice junction sequence	AATTCAAAGTCGTAGATTCTGAGACTGATGAAGTTCTTCCACCTGGTTCAAAGGGAATATTAAA AGTCAGGGGCCCACAATTGATGAAGGGATACTATAAgataaaaaacttaggggatattgtacct gctgaagttggggatagatttctaagcatgctgccttcctggcatgcatatgaaagagcttgtg agtatttc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GATAAAAAACTTAGGGGATATTGTACCTGCTGAAGTTGGGGATAGATTTCTAAGCATGCTGCCT TCCTGGCATGCATATGAAAGAGCTTGTGAGTATTTCATTTTCTCGTGCGGTGTTGAACAAGTAT ACACAACTGTGAGAAACTTGAAGGTATTATTACTTTAATAATCTGTTTGATTATGGTTTGTCAT AAAAGACGACACATTGCCTCATGCATTAATATCCTATATTTTCTTTCATTATAGGAGGATTTGG GACATTATCAACCACATTACTTGATTTCTGTTCCTTTAGTTTATGAAACTTTATATAGGTAAAT CCTTTTCCAGGAAGAGGAGTGTTAGGAACACGCTCTTTCAAACACACTCTCACTAATTGTATTT CATGTCAACTGTGAATTGCATTTATTATTCTTGATTCCTGTAGTGGGATCCAGAAGCAGATATC TACAAGCTCCCTTGTTAGAAAGCTTGTTGCACTCACATTCATAAGGGTCAGCTTAAGGTACATG GAGTGTAAGCGTATTTATGAGGTATGGTCATCTGCTCTTTCTGTAGGTCTCTTAAGTGTTAGAA ACATTCCCAAAATCATCATTCTGTCTTAAAACCTGTTTTCTATGCTTTGGTAAAGGCTTATTTC ATCCAATTTTGTTCTTAAAAAAATAAGAGAAAAAATAGGGGCTGTAAAAGAAATTGGACTCGAT GACATTTTGTTGATCTGATGTGATACCATTGTGTCACAACAAATTGGGTCTGTTTGGTAAGATG GGTCATACTCCAAAGGGATAGACCCAATCTGTCAATTGCAGAATCCTATCTTACTATCAAATAT TCAAATTTAGAGTAAAACCATGAATCTGTCCTTGAGAAATTTAGGGCGGGTTACCTTAGTCCCC TAATAATACCAAAATCCCTCATTGGTCCCTAAAAAGGATCCATATGACCCACATTTTGTGATTC TAGGTACTAGAATTCTTAGAATCTTAGAATGTGAGTTCAGGCCTAACTTAACCCCAAAAGTTAG TTCAAGGAGTGAGGGTTGCCTCTCACTTATATGTTCTATCTTAGCTTTATCCTTATACTCTGAT ACCATCTTAGAATGTGAGTTTAGGCCTAACTCAACCCCAAAAGCTAGCTCAAGAGGTGAGAGTT GTCTCTCACTTATATATTCTATCTTGGCTTTATCTTTAGCCAATGTGAGACTTGGGTTTTTCCC AATAAGAATGGAATTTTTATGTTCTTAAGGACTGATATGTACCGTCAGATTTCTCAAGGACAAA TTTAGGGGTTTACTCTCAAATTTATTTCTGATCACAGTCACACCTCATCTCAGGTTCACTCTTG ATAATTATTCCATCATTAGCACTTTCCAAATTAGATTAAACAAGTAGATCTGTAAATGGACGTA GTTCTAATTCTACCCAAACATGTTGCTTTTAATAAATTTTTAATATGTTTGTAGGGTAAATGTC TAACAAAGGATCAGAAGCCACCGTCCTACCTCCATTCAATTTTGGACTGGTTATGGGCAAGAGT TGTTGCCACAATATTATTTCCAGTTCATTTACTGGCGAAGATACTGGTCTACCATAAAATTCAT TCAGCTATTGGAATTTCAAAGGTCTTGTATTCTGAAATATGATCTATAATAAAATGTTTTTCTT TTTTTTTTGGTGAAAAAATGTTTTGCTCATGATAAGCTAAACCCTCTGGCACTCTGCAGGCTGG AGTAAGTGGCGGTGGTAGCTTATCTTCTCATGTGGATAGATTTTTTGAGGTCTGATACTTCACA CATGCAATTCTTGGGCAGGAATTTTCTTTTTGACATTCTACTGACATTTTTTTAAAATCAATAT ACAGGCTATTGGTGTGAATGTGCAGAATGGATATGGTTTAACTGAAACTTCACCAGTTATTGCT GCTCGACGGCTTAGTTATAACGTAAGCAGTAGATTATCAACTGCATTAATATTATGCTGAGCTG AGTATTTTAACATATCAACTGCAGTAAATTATTTGAACTCCTACTGTTTTCTCTCCCTCTACCT TAGTTTATCTGCTTCTCCCCCCACCCCCCCTTCTTAAAAAGTAAAATAGTAAATTGAGAATAAC AATTATTTGAGCTTGTTAAGAAAACAAAGGGCTAAATGAGAGTTCTACTTAATCAGCATTTCTT TTGTTTATAATTATTTTTAAAGTTCATATTTATTTGCAAAAGATACCCATTCTACTTAATCTGT TAATAGCAAGCACACTGTAAACCTTTTGGTTTTTGTCAAAAGTTTCTATCTAGACCAGATATTC ATAATAATTACAAAATTTGCATTCTTTTAATTAGTTTGTATTTTGTGTCTGCAAAGAGTAGTGC TTATATCTGAATGTTATAGATGCAATCTTTTGAAGGTTATTGGGTCTGTTGGCCATCCAATTAA GCATACAGAATTCAAAGTCGTAGATTCTGAGACTGATGAAGTTCTTCCACCTGGTTCAAAGGGA ATATTAAAAGTCAGGGGCCCACAATTGATGAAGGGATACTATAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.026938038

Conservation Information
Conserved circRNAs	NA
PMCS	0.026938038

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhao et al., 2017a

circRNA

Detail information of GLYMA_11G254100_circ_g.1

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