Detail information of GLYMA_11G254100_circ_g.2


General Information
CircRNA Name GLYMA_11G254100_circ_g.2
ID in PlantcircBase gma_circ_008951
Alias novel_circ_000215
Organism Glycine max
Position chr11: 34468791-34471330  JBrowse»
Reference genome v2.0.38
Type   e-circRNA
Identification method find_circ
Parent gene GLYMA_11G254100
Parent gene annotation hypothetical protein
Parent gene strand +
Alternative splicing GLYMA_11G254100_circ_g.1
Support reads NA
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered KRH31560:7
KRH31561:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCAAAGTCGTAGATTCTGAGACTGATGAAGTTCTTCCACCTGGTTCAAAGGGAATATTAAAA
GTCAGGGGCCCACAATTGATGAAGGGATACTATAAGataaaaaacttaggggatattgtacctg
ctgaagttggggatagatttctaagcatgctgccttcctggcatgcatatgaaagagcttgtga
gtatttca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 756
Transcript exons: 34468791-34468940,34469036-34469103,34469217-34469322,34
470252-34470410,34470513-34470566,34470650-34470730,3447
1193-34471330
ATAAAAAACTTAGGGGATATTGTACCTGCTGAAGTTGGGGATAGATTTCTAAGCATGCTGCCTT
CCTGGCATGCATATGAAAGAGCTTGTGAGTATTTCATTTTCTCGTGCGGTGTTGAACAAGTATA
CACAACTGTGAGAAACTTGAAGGAGGATTTGGGACATTATCAACCACATTACTTGATTTCTGTT
CCTTTAGTTTATGAAACTTTATATAGTGGGATCCAGAAGCAGATATCTACAAGCTCCCTTGTTA
GAAAGCTTGTTGCACTCACATTCATAAGGGTCAGCTTAAGGTACATGGAGTGTAAGCGTATTTA
TGAGGGTAAATGTCTAACAAAGGATCAGAAGCCACCGTCCTACCTCCATTCAATTTTGGACTGG
TTATGGGCAAGAGTTGTTGCCACAATATTATTTCCAGTTCATTTACTGGCGAAGATACTGGTCT
ACCATAAAATTCATTCAGCTATTGGAATTTCAAAGGCTGGAGTAAGTGGCGGTGGTAGCTTATC
TTCTCATGTGGATAGATTTTTTGAGGCTATTGGTGTGAATGTGCAGAATGGATATGGTTTAACT
GAAACTTCACCAGTTATTGCTGCTCGACGGCTTAGTTATAACGTTATTGGGTCTGTTGGCCATC
CAATTAAGCATACAGAATTCAAAGTCGTAGATTCTGAGACTGATGAAGTTCTTCCACCTGGTTC
AAAGGGAATATTAAAAGTCAGGGGCCCACAATTGATGAAGGGATACTATAAG

Genomic sequence ATAAAAAACTTAGGGGATATTGTACCTGCTGAAGTTGGGGATAGATTTCTAAGCATGCTGCCTT
CCTGGCATGCATATGAAAGAGCTTGTGAGTATTTCATTTTCTCGTGCGGTGTTGAACAAGTATA
CACAACTGTGAGAAACTTGAAGGTATTATTACTTTAATAATCTGTTTGATTATGGTTTGTCATA
AAAGACGACACATTGCCTCATGCATTAATATCCTATATTTTCTTTCATTATAGGAGGATTTGGG
ACATTATCAACCACATTACTTGATTTCTGTTCCTTTAGTTTATGAAACTTTATATAGGTAAATC
CTTTTCCAGGAAGAGGAGTGTTAGGAACACGCTCTTTCAAACACACTCTCACTAATTGTATTTC
ATGTCAACTGTGAATTGCATTTATTATTCTTGATTCCTGTAGTGGGATCCAGAAGCAGATATCT
ACAAGCTCCCTTGTTAGAAAGCTTGTTGCACTCACATTCATAAGGGTCAGCTTAAGGTACATGG
AGTGTAAGCGTATTTATGAGGTATGGTCATCTGCTCTTTCTGTAGGTCTCTTAAGTGTTAGAAA
CATTCCCAAAATCATCATTCTGTCTTAAAACCTGTTTTCTATGCTTTGGTAAAGGCTTATTTCA
TCCAATTTTGTTCTTAAAAAAATAAGAGAAAAAATAGGGGCTGTAAAAGAAATTGGACTCGATG
ACATTTTGTTGATCTGATGTGATACCATTGTGTCACAACAAATTGGGTCTGTTTGGTAAGATGG
GTCATACTCCAAAGGGATAGACCCAATCTGTCAATTGCAGAATCCTATCTTACTATCAAATATT
CAAATTTAGAGTAAAACCATGAATCTGTCCTTGAGAAATTTAGGGCGGGTTACCTTAGTCCCCT
AATAATACCAAAATCCCTCATTGGTCCCTAAAAAGGATCCATATGACCCACATTTTGTGATTCT
AGGTACTAGAATTCTTAGAATCTTAGAATGTGAGTTCAGGCCTAACTTAACCCCAAAAGTTAGT
TCAAGGAGTGAGGGTTGCCTCTCACTTATATGTTCTATCTTAGCTTTATCCTTATACTCTGATA
CCATCTTAGAATGTGAGTTTAGGCCTAACTCAACCCCAAAAGCTAGCTCAAGAGGTGAGAGTTG
TCTCTCACTTATATATTCTATCTTGGCTTTATCTTTAGCCAATGTGAGACTTGGGTTTTTCCCA
ATAAGAATGGAATTTTTATGTTCTTAAGGACTGATATGTACCGTCAGATTTCTCAAGGACAAAT
TTAGGGGTTTACTCTCAAATTTATTTCTGATCACAGTCACACCTCATCTCAGGTTCACTCTTGA
TAATTATTCCATCATTAGCACTTTCCAAATTAGATTAAACAAGTAGATCTGTAAATGGACGTAG
TTCTAATTCTACCCAAACATGTTGCTTTTAATAAATTTTTAATATGTTTGTAGGGTAAATGTCT
AACAAAGGATCAGAAGCCACCGTCCTACCTCCATTCAATTTTGGACTGGTTATGGGCAAGAGTT
GTTGCCACAATATTATTTCCAGTTCATTTACTGGCGAAGATACTGGTCTACCATAAAATTCATT
CAGCTATTGGAATTTCAAAGGTCTTGTATTCTGAAATATGATCTATAATAAAATGTTTTTCTTT
TTTTTTTGGTGAAAAAATGTTTTGCTCATGATAAGCTAAACCCTCTGGCACTCTGCAGGCTGGA
GTAAGTGGCGGTGGTAGCTTATCTTCTCATGTGGATAGATTTTTTGAGGTCTGATACTTCACAC
ATGCAATTCTTGGGCAGGAATTTTCTTTTTGACATTCTACTGACATTTTTTTAAAATCAATATA
CAGGCTATTGGTGTGAATGTGCAGAATGGATATGGTTTAACTGAAACTTCACCAGTTATTGCTG
CTCGACGGCTTAGTTATAACGTAAGCAGTAGATTATCAACTGCATTAATATTATGCTGAGCTGA
GTATTTTAACATATCAACTGCAGTAAATTATTTGAACTCCTACTGTTTTCTCTCCCTCTACCTT
AGTTTATCTGCTTCTCCCCCCACCCCCCCTTCTTAAAAAGTAAAATAGTAAATTGAGAATAACA
ATTATTTGAGCTTGTTAAGAAAACAAAGGGCTAAATGAGAGTTCTACTTAATCAGCATTTCTTT
TGTTTATAATTATTTTTAAAGTTCATATTTATTTGCAAAAGATACCCATTCTACTTAATCTGTT
AATAGCAAGCACACTGTAAACCTTTTGGTTTTTGTCAAAAGTTTCTATCTAGACCAGATATTCA
TAATAATTACAAAATTTGCATTCTTTTAATTAGTTTGTATTTTGTGTCTGCAAAGAGTAGTGCT
TATATCTGAATGTTATAGATGCAATCTTTTGAAGGTTATTGGGTCTGTTGGCCATCCAATTAAG
CATACAGAATTCAAAGTCGTAGATTCTGAGACTGATGAAGTTCTTCCACCTGGTTCAAAGGGAA
TATTAAAAGTCAGGGGCCCACAATTGATGAAGGGATACTATAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.231846667
Functional Information
Coding potential Y
Potential coding position 34468846-34471327(+)
34468893-34471326(-)
34468868-34471298(-)
Potential amino acid sequence MLPSWHAYERACEYFIFSCGVEQVYTTVRNLKEDLGHYQPHYLISVPLVYETLYSGIQKQISTS
SLVRKLVALTFIRVSLRYMECKRIYEGKCLTKDQKPPSYLHSILDWLWARVVATILFPVHLLAK
ILVYHKIHSAIGISKAGVSGGGSLSSHVDRFFEAIGVNVQNGYGLTETSPVIAARRLSYNVIGS
VGHPIKHTEFKVVDSETDEVLPPGSKGILKVRGPQLMKGYYKIKNLGDIVPAEVGDRFLSMLPS
WHAYERACEYFIFSCGVEQVYTTVRNLKEDLGHYQPHYLISVPLVYETLYSGIQKQISTSSLVR
KLVALTFIRVSLRYMECKRIYEGKCLTKDQKPPSYLHSILDWLWARVVATILFPVHLLAKILVY
HKIHSAIGISKAGVSGGGSLSSHVDRFFEAIGVNVQNGYGLTETSPVIAARRLSYNVIGSVGHP
IKHTEFKVVDSETDEVLPPGSKGILKVRGPQLMKGYYKIKNLGDIVPAEVGDRFLSMLPSWHAY
ERACEYFIFSCGVEQVYTTVRNLKEDLGHYQPHYLISVPLVYETLYSGIQKQISTSSLVRKLVA
LTFIRVSLRYMECKRIYEGKCLTKDQKPPSYLHSILDWLWARVVATILFPVHLLAKILVYHKIH
SAIGISKAGVSGGGSLSSHVDRFFEAIGVNVQNGYGLTETSPVIAARRLSYNVIGSVGHPIKHT
EFKVVDSETDEVLPPGSKGILKVRGPQLMKGYYKIKNLGDIVPAEVGDRFLSMLPSWHAYERAC
EYFIFSCGVEQVYTTVRNLKEDLGHYQPHYLISVPLVYETLYSGIQKQISTSSLVRKLVALTFI
RVSLRYMECKRIYEGKCLTKDQKPPSYLHSILDWLWARVVATILFPVHLLAKILVYHKIHSAIG
ISKAGVSGGGSLSSHVDRFFEAIGVNVQNGYGLTETSPVIAARRLSYNVIGSVGHPIKHTEFKV
VDSETDEVLPPGSKGILKVRGPQLMKGYYK(+)
MKYSQALSYACQEGSMLRNLSPTSAGTISPKFFIL*(-)
MHARKAACLEIYPQLQQVQYPLSFLSYSIPSSIVGP*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References lv et al., 2020