Detail information of Zm00001d003713_circ_g.2


General Information
CircRNA Name Zm00001d003713_circ_g.2
ID in PlantcircBase zma_circ_001052
Alias circ440
Organism Zea mays
Position chr2: 56085088-56089994  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRI
Parent gene Zm00001d003713
Parent gene annotation Exocyst complex component SEC5A
Parent gene strand +
Alternative splicing Zm00001d003713_circ_g.1 Zm00001d003713_circ_g.3 Zm00001d003713_circ_g.4
Support reads 5
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d003713_T007:11
Zm00001d003713_T012:4
Zm00001d003713_T008:8
Zm00001d003713_T006:13
Zm00001d003713_T004:13
Zm00001d003713_T003:14
Zm00001d003713_T005:13
Zm00001d003713_T009:9
Zm00001d003713_T001:14
Zm00001d003713_T013:3
Zm00001d003713_T011:5
Zm00001d003713_T010:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATAGGAATAATGATGAGCGAAGTTCTGACATGCGAGATCTGATGACTTCTTTCTCTGCGCTT
GAAGAGAAAGTCCTGGACCAATATACTTTTGCAAAGgtgtcatagataataaatccctgcgatt
gatcactgatgcttcagtaagttctccaatttcaagggagaagtctcaaggtttagatcccaat
atgcgagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGTCATAGATAATAAATCCCTGCGATTGATCACTGATGCTTCAGTAAGTTCTCCAATTTCAAG
GGAGAAGTCTCAAGGTTTAGATCCCAATATGCGAGGTAGGCCTGATGGTTTTACTGTAATTCTT
CTTGCATTTGATTCATGCTTATTAATAGTTCTATATTTGCACTTCTGCAGACAAAGTTATCTAT
TCATCTCCAAGTTTTGATCCCAAAGTTTTCCTTTCGTGGGTCCACAAAGACACAAGCGCTGCTG
ATTTAGAGGCTGGTGCTCTCACTTTGAAAACTGATCTCAAAGGGAGAACACAGCAGAAAAAACA
GTTAGTCAAGGAGAACTTTGATTGTTTTGTCTCGTGCAAAACTACAATAGATGGTATTTACGCA
ATTATTAGATATGCCATGTTGCAGATAAATGTTCATGATCCTGAGTTTCTGGACATGGACAATG
ATTGCATCTCCTTGTAATACACAGTTTTATGCAGACATTGAGTCAAAATTGAGACAGATAGAGG
AAGATCCTGAAGGTGCAGGTACTGCTCACTTGTATTCAGTGACACAAAAAATTAGTGGTGTGGC
GAATCGTGCATTTGAGCCTCTATTTGAGAGGCAGGTATAGAAACTGAGCTTCTCTAGAACTACT
GCTATTGCTTCAACATTCCTTGAGTGCACTGAATTCTGAACTTCTGGTACAGGCCCAAGCTGAA
AAGATCAGATCTGTTCAGGGAATGCTTCAAAGATTTCGGACACTATTTAACCTCCCAAGTGCAA
TCCGTGGGAACATTAGAAAAGGAGAATATGATCTTGCTGTCAGAGAGTACCAAAAAGCAAAGTC
AATTGTTCTTCCTTCCCATGTATGGCAACTTCCTATTTTATTTTATCTGCATATGTTATCCAAT
TGGGTGGTGAAGCATGAAAGAATGAATGACACAGTATGGTGTATCGTGCACTCAATGAAATTAG
GTTAATGTCGTGTTCCAGATTTGTGTTAAGTTATATATTGACCATTTTATACACAATGGCTTAC
ATATGTATCTCGTCGAATAAAGGTCTCCACAGTTAAATGTGAGTAACGGATAATCACTGAGCAT
GGCTGATTTATGCAAAGATCTTGGAAATACTAGGTTTAACGATCTAGTAACTCATGAATACTTA
ATCCACTGAACTGACTTGTTTGTGTTTGGACCACTTGACAGTTTGATTTTGGTATCTTTTTGTT
GTAGAAAAGTATGTCTGATTCCATGCTGAACTGCTGAAGTATAGCACGTGCGAATTTCTTCACT
GTGTTTTGTGGCCCCATCGTTCGTTGTTAGGCACTATATTGGCACAGCAATAGATCTACTGCAT
TTAGTATGTTTATGTTATGTTGAACAACCTGCAGGTGGGGATACTAAAACGTGTACTCGAAGAG
GTCGAAAAGGTGATGCAGGAATTCAGAGGCATGCTTTATAAGTCCATGGAGGATCCTCACCTTG
ACTTTGCTGAGGTTAGCGGAACATGTCTATAGTATCTATCTTTAGAGGCATTTAGAAATTACCT
ACTTTTGTTGACAGCGAAATATGGTTTAGCCTGCAAGTTTAGGTTTATGTATTATGGAACACAA
CCAGATAGAGAAAGCATAATAAAGGACAATTAACAAATGATTATAGGACACTGCTTCTTTAAAA
TGGACTACTTGATTTCCTAGTACTTAATTGAACTCTATTTTAAGAATGAAGTTATCTGAGGTTT
TTGTTCTGTTTGCTTACTGATTTTGTTCTTTACCATTCAGCTTGAGAACATTGTTCGTCTACTG
TTGGAGCTGGAACCTGAAACAGATCCAGTGTGGCATTATCTAAATATTCAGGTTGAATTTTAAT
CTAAATATAGAAGGGCAGACCTAGTGCAGTGGTGAGAGCTGTCTCACCGAGTCACCAAGTCGTG
GGTTTGAAGCAGCCTCTCCTCATTTGCTGGAGGAAGGTTTTCCTCGGTTTATCCCTCTTTTGGA
CCTCACTCATGTGGGAGCCTCTGACACTGGGTCTGCCCTTCTTTTAATTTTAATCTAAATATGC
ATGCTGTAATGTAACTGAGCCTTTCAATTTTGTGACTTCTGTTTGTATTATCTTTTTACTTATA
TCATAATATTTCCTATCAGAATAGCAGGATTCATGGATTGTTTGAAAAGTGTACTCAAGATCAT
GAATTGCGAATGGAAGTTTTGCAAAATAAAATTCGTGAAAAAGTGCTCTCTGATTCAAAGTGGA
GGCAGCTGCAACAAGATTCAAATAAATCTGTGAGCATATACTTTCTGTAGTTCGTCATATCATA
TTTACATGCAATTTTGTATCTTCCCTATGTTAACGTAGACCTTTTTGTTTAGCTGGAAGTTGAT
TCTGCCATTTGTGATTCTCCTCGAGCTGATCAGTTGTCAACAAACTTTATGGCTGAGGAAGCTG
ATAGTTTAAGGGCCACCTACACTCGTAGGCTAACTTCTGTGCTTATACAGCATGTTCCAGCTTT
CTGGAGATTAGCTTTATCTGTTTTCAGTGGAAAGTTTGCCAAGGTAAGAACCTTATCAGTTGCA
TTACAATTTACAAGAAAAATGTAAATTGTTGACAGTGTAACTATATGGCTTGCGACACTAATAA
GTTTTTTTTTCACAAAGCAGATAGCTCTGCTGAACTGCAGAAACTTATAAACTCTTCCAGTCCT
ATGGTTGTGCAGTAGTAAACTGAAATTAAAGGGTATTTCTGATAATAACGGCCTGAATAATGAT
GCCTACTTTACTCCATATTCATTGTGAAGAAGACAACGATCCTTCTTGTACTTATTTTTGTTTT
GAAAAGAGATTTTATGGATTTGCTAATTATATATATATTTTATTTTCAGACAGCTTCTGGTAAT
GTAGTTTCTGATTCTGACATGAATGCAAAGCCGTCTGCAAATAAGAACGATGACAAAGGTGGAG
ATGTGAAGTACACAAACCACACTCTCGATGAAGTTGCTAGTATGGTTCGGGATACTATATCGGC
TTTTGACACTAAGGTGCAATTAGTGTGTTGTTAGGAATTTTAACATCAAATGTGATTGCTAGCA
GTAAGCATTTGATTGTATTAGTAATTTAACATGCTTTGTCAACAACACTACAACAGGTTCAGAG
TACCTTCCGTGATTTCGAGGAATGCAACATTCTTTGTCCATACATGAGTGACACTATAAAAGAA
ATAGCTAAGGCCTGTCAGACTCTTGAAGGGAAGGATTCATCTCCAACTGCTGGTATTTGTCTCT
TAATTAGACCTTTTCCCAAATCTGCAAAGTTCGTCTTGTATCCTGAATGTGTTTACAATTATGC
CAGTAAAATTGTTGCGCACCCTTCATTTTCAAATGACGAAGCTTTACGTTCTACGGCTTTGTTC
ATGGATGCGGGCAACAACTAAGGAGATATCAAAAGATGATACTTGGGTTATTTTATCCACCCTT
GAGAGAAACAAGTCTCCATATGCAATTTCATGCATGCCCCTGGAATTCCGTGACATAATAATTT
CAGCAATGGACCGGATTGATACGTAAGACTGCTTTATTTATATGTCGTATTGCATCTTTTTGCA
GTTTCTTATCCTGCATTATTTCCAAAGCCCTTTGATTTTTTTTGCATTACTACTTTGCAATTGG
CCATCTTTTTTAATATCTACTCCCTCCATTCCAAATTATAAGACATCTTGGTTTTTCTAGATTC
ATAGCCTTTACAATGCACTTGGACATACACCATGTCTAGACACATAGTAAGAGCAATGTATCTA
AAAAACCAAAACGCCTTATAATTTGGAACGAAGGAAGTATTTGGGCTAATAGATAATTATTTCT
TTTGTTGCACTTAAGCAGTATTTCTTTTTGGCAGTAAGTATAGTTGTTACAGTGTCAGGATTCA
GGAAGGAATTTGTCTTACTGTGTTGTATAATTTTATTGCTACAGCAGTATATCTTAAATTGTTG
TAATGATCAAGCATAAGCTTTTGCCATTATTAATCTTTAGATTTCTGGTTATCCTGTCTTACCT
ATGAATGAATCCATTCACCTGAGTTTAAGGTTTGTGTCTCTTGTCTTTTGCTCTGCAAAATCTG
AAATTTGTCTTGAGCACAACCTTCTAAAGTGATGGCACATCAGTCTCCAGGCTCTGTGTTCAGT
ATATTCTAAATTCTACCCCCCTCTCTCTCCCTGCACTGCAAAATTTGGGAACAGCAAGTGCTTT
CCTGCCTTCATTGTTGGTAGTGCTGAACATGTCCCTAATCTGTGTTTGTTTATTTCAGTATGAT
TCTTAATCTGATGAGCGAGACTGCGAAGTCATATGACATTTCTCAACCACTTCAGGAAATTAAT
GAGTCTGTCAGACTTGCATTTTTGAATTCCTTTCTGGATTTTGCTGGTATGAATCTCTAAGTAG
CTAGAGGATTTTTTTAATTCTCTAGTCGTGGTCTGAAAATCTTTGACATTGCTTCAGGTTATCT
GGAGAGGTTTGGAGGTGAACTAACTGAGAACAGGCCAAACAATGAAAACAATTATGTTCAAAAT
GGATACATAAATGGTACTAGAGAAACATCTGCTAACACAGATGGAGATTTGCACAAAAAGCTGC
TGGTTGTTTTGAGTAACATTGGATATTGTAAAGCTGAACTTTCAGAAGAACTGTACACCACATA
TAGACACATTTGGTCTCCAGTCAGGTACCTGATAGCATTCATGAAATTTTCGCCCTTTCCTTCG
CTGTGGGAAACCATGTACCCATTATAGAAGCTGTTCTCAAGGTATGTCTAATCCATTCAATGAA
AATTTTATCATAGGAATAATGATGAGCGAAGTTCTGACATGCGAGATCTGATGACTTCTTTCTC
TGCGCTTGAAGAGAAAGTCCTGGACCAATATACTTTTGCAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.006198606
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b