Detail information of BGIOSGA035227_circ_g.1


General Information
CircRNA Name BGIOSGA035227_circ_g.1
ID in PlantcircBase osi_circ_008997
Alias Chr11:17439582_17440197(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 12083820-12084435  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA035227
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA035226_circ_ig.1 BGIOSGA035227_circ_igg.1 BGIOSGA035227_circ_ig.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA035227-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTCCCGTAGGGGCAGGATTCTCATACGCGGCAACACAGGAAGGCTCCAAGACTAGCGATACC
AAGACAGTGAAACAGCTTGTTATTTTCCTCAGAAAGgatacgtggaggtgaacgagagtacggg
cgtgcgcctcttctactactttgtccagtcagagaaggatcctgatgtagacccacttttattg
tggctatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATACGTGGAGGTGAACGAGAGTACGGGCGTGCGCCTCTTCTACTACTTTGTCCAGTCAGAGAA
GGATCCTGATGTAGACCCACTTTTATTGTGGCTATCAGGTGGGCCCGGCTGTTCTAGTCTCTCT
GGCCTAACCCACGAGATAGGTAAATTAACTAGCAGGTTATTTTTTTTCCTCAGATTATTGAAAA
AATTCCACCGAGTTCCTTCGGATAAACAATATGGTAAACCATGCTTATACAATAACGTTTGTTG
TATTTAACAGATTATTCATGTGCATACATTTATAGGACCATTCCAATTCGCCGCAAAACGGTAT
TACAGTGGAGGATTGCCGAAAATTATCTATCAACCAGAGACTTGGACTAAGGTTGCTTACATTA
TTTAATGGACGTGGCAACAAAGCAAATTATTTGTATCTCTGTCTCAAATGAAAAAAAGGCATGT
GCCCATATCCAGGTTTTAATGGATGAATTTTGCATGGTTTTGCAGGTGAGCAACATAATTTTTG
TGGATTCTCCCGTAGGGGCAGGATTCTCATACGCGGCAACACAGGAAGGCTCCAAGACTAGCGA
TACCAAGACAGTGAAACAGCTTGTTATTTTCCTCAGAAAG
Conservation Information
Conserved circRNAs osa_circ_009311
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021