Detail information of Os06g0171800_circ_g.6


General Information
CircRNA Name Os06g0171800_circ_g.6
ID in PlantcircBase osa_circ_042266
Alias NA
Organism Oryza sativa
Position chr6: 3603992-3604196  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0171800
Parent gene annotation VRR-NUC domain containing protein. (Os06t0171800-01)
Parent gene strand -
Alternative splicing Os06g0171800_circ_g.3 Os06g0171800_circ_g.4 Os06g0171800_circ_g.5
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0171800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCCTTTGAATTGACCTTGTCATTATTCAACGAGAAGAAAGCTCCATCGCTAGATACATTTCC
ATCGGTCGGTTCCATATGCTCTGCCTCATCACTGGTtattttctgtatatggtaataatacatt
gggtggtagacaggtatcacatgtctccgagatgtcaggagagccatgcaggcagccaggtgat
gaagcatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 205
Transcript exons: 3603992-3604196
TATTTTCTGTATATGGTAATAATACATTGGGTGGTAGACAGGTATCACATGTCTCCGAGATGTC
AGGAGAGCCATGCAGGCAGCCAGGTGATGAAGCATTAGCACTTCCCTTTGAATTGACCTTGTCA
TTATTCAACGAGAAGAAAGCTCCATCGCTAGATACATTTCCATCGGTCGGTTCCATATGCTCTG
CCTCATCACTGGT

Genomic sequence TATTTTCTGTATATGGTAATAATACATTGGGTGGTAGACAGGTATCACATGTCTCCGAGATGTC
AGGAGAGCCATGCAGGCAGCCAGGTGATGAAGCATTAGCACTTCCCTTTGAATTGACCTTGTCA
TTATTCAACGAGAAGAAAGCTCCATCGCTAGATACATTTCCATCGGTCGGTTCCATATGCTCTG
CCTCATCACTGGT
Conservation Information
Conserved circRNAs NA
PMCS 0.107723577
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study