Detail information of Os06g0171800_circ_g.5


General Information
CircRNA Name Os06g0171800_circ_g.5
ID in PlantcircBase osa_circ_029841
Alias Os_ciR10690
Organism Oryza sativa
Position chr6: 3603827-3603965  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os06g0171800
Parent gene annotation VRR-NUC domain containing protein. (Os06t0171800-01)
Parent gene strand -
Alternative splicing Os06g0171800_circ_g.3 Os06g0171800_circ_g.4 Os06g0171800_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os06t0171800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAATCTGTCACTGAAAGCAAACCAATAGTACTCGAAGTTGCATCAGTTGAAGGCATGTGGGAC
AAGCActtcttgcaattctatgttttcatggaacctcctgcccactatgacagtgtcaactact
accgaattgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTTGCAATTCTATGTTTTCATGGAACCTCCTGCCCACTATGACAGTGTCAACTACTACCGA
ATTGCTAGAATCTGTCACTGAAAGCAAACCAATAGTACTCGAAGTTGCATCAGTTGAAGGCATG
TGGGACAAGCA
Conservation Information
Conserved circRNAs NA
PMCS 0.145685612
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015