Detail information of Os07g0459200_circ_g.2


General Information
CircRNA Name Os07g0459200_circ_g.2
ID in PlantcircBase osa_circ_033680
Alias NA
Organism Oryza sativa
Position chr7: 16017709-16021067  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os07g0459200
Parent gene annotation Similar to Possible kinase. (Os07t0459200-01);Similar to ubiquin
one biosynthesis protein ubiB. (Os07t0459200-02)
Parent gene strand -
Alternative splicing Os07g0459200_circ_g.1 Os07g0459200_circ_g.3 Os07g0459200_circ_g.4
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os07t0459200-01:8
Os07t0459200-02:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGATCCTTCCAAACTGGCTTTCTAACGACTCCTTTCTGATCTTTGCATATTCTGAGGACGGT
CTCTCCCCATGAACACTTGAGAATGCACTAGAAAAGcatttgtataagccctacacgatagtgc
cttggaatatcccccatcataccaaaatcaaaatacgcgagtgatccaccttcagttgcaacca
gattacct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1063
Transcript exons: 16017709-16017870,16018222-16018391,16018625-16018703,16
019155-16019312,16019441-16019576,16020110-16020181,1602
0556-16020597,16020824-16021067
CATTTGTATAAGCCCTACACGATAGTGCCTTGGAATATCCCCCATCATACCAAAATCAAAATAC
GCGAGTGATCCACCTTCAGTTGCAACCAGATTACCTGGATGGGGGTCTGCATGGAAAAAGCCTT
CTTCAAGAAGCTGCCTCAATGAACAATAGAGACCCTCATCGATCATCCTTTTCCTGTTCAGATT
GGCTTTGCCAATGCGCTCAGCATCAGTGAGCTTGATCCCATCAATCCATTCTAGAGTTAATATA
GATTTACGTGTAAAATTCCAGTAGACCTTTGGGACTTTGATACTTGTCCCATCTCCGGAGCTAT
TCCCACCTAAATCATGAGAATAAAGTCTCGCAAATCTTTCAGCATTCCTTCCCTCTAAAACATA
ATCAATCTCATCAAACATGTGCCTGACAATCTCATTGACTGCTACCAGTAAATCTTTGCGAGCC
TTTGCAAACCGTTTCAACTGTCCTCCGATCATATGGAACAAAAGTGCATCTAGAGTCAGCAAGG
GAGTCATTCCAGGCCTCTGAACTTTGACTGCGACAAGCTCTCCAGAGTGTAGATGAGCTTTATA
TACTTGCCCCAGCGATGCTGCAGCAACTGGCTCTGGGCTGATATCAGCAAATAGATCAGAAATT
CGAGAACCCAGTTGAGACTCAATAGTCCTGATTGCGATACGAGTAGGAAATGGTGGTATCTGGT
CCTGTAGCTTAGAGAGCTCTTGACAATATGCATTCGGCAATATATCAGGGCGTGTGCTCAATGC
TTGTCCAAGCTTGATGTAAAAAGGCCCCAACCGGATCAAGGTCTCCTGGAACTTCTCAGCCCGT
TTGTGCACATCACTGAGCAATAAATGCCAAATAGTGAGCTTCATAACATGAAAAGAGATAATTG
CTGCCCTGTACATTGCAAGGAATGGACCAAAGCCACGATCTGCAAATAGTGTACGTGAGCTTGA
ACCCAAGATCCTTCCAAACTGGCTTTCTAACGACTCCTTTCTGATCTTTGCATATTCTGAGGAC
GGTCTCTCCCCATGAACACTTGAGAATGCACTAGAAAAG

Genomic sequence CATTTGTATAAGCCCTACACGATAGTGCCTTGGAATATCCCCCATCATACCAAAATCAAAATAC
GCGAGTGATCCACCTTCAGTTGCAACCAGATTACCTGGATGGGGGTCTGCATGGAAAAAGCCTT
CTTCAAGAAGCTGCCTCAATGAACAATAGAGACCCTGTAAAATTTGTTTTGAAATATTAGCATG
CCTAAATAAGAACACGACTATACATGCAAGACTACCAAACACCTTCCATGAAAAACAGAAGAGG
TACGAAAATGTGCTAAAATGGTGAAAAACACCTGGACAATACACTGAAAAACACGCAGAAACAA
GCCCAACAAAACAGTTGCACGGTACAAACAAATGCAAGCACAATTTGCAAGTCTATGTACAATG
TATATGGTCAGACAAGCTCATGTTATGAAAATATGTGGAGAGAGGAAAGTAGTGATTTAATATA
AATCTGAATTCTTCATAGTATTGTGTTAGTCACAATATACAGTAAGTATAACATTTCTGCGATA
CCTCATCGATCATCCTTTTCCTGTTCAGATTGGCTTTGCCAATGCGCTCAGCATCAGTGAGCTT
GATCCCATCAATCCATTCTAGAGTTAATATAGATTTACGTGTAAAATTCCAGTAGACCTTTGGG
ACTTTGATACTTGTCCCATCTCCGGAGCTATTCCCACCTAAATCTGCCAGGAAAAAAAACACAA
TGATGGCCCTACAGTGTGCTTTGTATAATAAATAGCAGAGAGCCAGAGATCAATCTGAGCTGAA
AGAGCACTAGGAAATGTGAATGTAAAAGGTTTGGATATGATGGTCGAGATAAATGGGAAACAGG
AGAGCAAGCTTGTCAGATAGATTTAGAGGAACCCACACTAGCAGGTAGCAAAAATCAAAAATTG
AATAAAAATTAAGAACTCACCATGAGAATAAAGTCTCGCAAATCTTTCAGCATTCCTTCCCTCT
AAAACATAATCAATCTCATCAAACATGTGCCTGACCTGTTGAACAGAAGGTTCAAAAGCTATAA
GCAAACTATATTGCAATATATATTAACGGCCAAAATATGGGAAACGTGGTCTAGAATGGAAAAA
CATAGTATATGGCAGTTGCAACTAAATTGTCTGAAACAAATTATATTACAGTTGTCTTAATGAG
ACCATCTATTATTAGTCCTACAATACAAAACTTAAATTTTGGATTGAGATATTGACATGGTTTC
TATGACATTATTTTGACCACAAAAATACATTTTCATGCATCAACAAAACCTAGAAAAATACAGT
ATTAGGAAAGTATTTCACTTTCATTAGAACACACATTAGAACAACACATATTAAATTAACATGG
AACCATAGAAAATGTAAGCAGGACATAAGGTTATAATCTAATAGTATCGGATTAGCATGAATAG
ATCATTATATCCAATTGAAACAGAAGTTAAATGCTCACAATCTCATTGACTGCTACCAGTAAAT
CTTTGCGAGCCTTTGCAAACCGTTTCAACTGTCCTCCGATCATATGGAACAAAAGTGCATCTAG
AGTCAGCAAGGGAGTCATTCCAGGCCTCTGAACTTTGACTGCGACAAGCTCTCCAGAGTGTAGA
TGAGCTGCATGACTTGAAATATCAAAGAATGCATTTCAACTTGGAGAACTCAGGTCTGAAATAG
ATGCTTAAGGTCTTAAGGAAGATAGCCACCAACTCATTAGATAAAATGTCTTGTCAGGCATGGC
TAACCTTTATATACTTGCCCCAGCGATGCTGCAGCAACTGGCTCTGGGCTGATATCAGCAAATA
GATCAGAAATTCGAGAACCCAGTTGAGACTCAATAGTCCTGATTGCGATACGAGTAGGAAATGG
TGGTATCTGGTCCTGATGAGATAGTTGTGATTTGTCAACATACACCTCTAAAAAGAAATAAATA
AAGCAAAAGGAATGTACGGCTTAAGGGTGCTTATAAGCCATACGGCTGCCATTGATTGACCTAG
CCTAATGCTGATTATAAGCCGCAAAAAAAATATTTGTGGGTAAAACTTTTATGTGTGTCCTTAG
TGATTTAAAAGCCAGTGCTGGAAAATAAACTTCAAAGAAAAACATCAAAATCAAGTTTTAAAAT
TCAAATTTTGACAGCGGCTTAAAGCTTCAACATGATTGCCTTCAATTCCATTGAGTAGAGCATT
ACTAACTGCGGAAATCCCATATAAACAGACTTTGAGTACTGTCTATTTTGGAACCTAGACTTAG
TTTAGCACTTTTTATGCCTCAATTTTGGGACCTAGCTCTGCCCTGATCCCTCAATACTTACAGA
AAGTTGGTGCAAACAATTAGATGAAGTATGTTGAAGGTAAATGCTACTTGTTTCCCATCAGTTA
AGCAAAATTATAAAATGCACAACAAAGCACTACCTGTAGCTTAGAGAGCTCTTGACAATATGCA
TTCGGCAATATATCAGGGCGTGTGCTCAATGCTTGTCCAAGCTGCATCATGCAAAGAGACAAGG
AAAATGAACAGATTGGTAACTTTCAACAGTGAATAAGGAAAACATATCAAATCTAAGACAAAAT
AAACCATTGAGAATGAATTCTTCCAGTTAAAAACCAAATATAGACATAGTAACTTGTCATGATG
AAATGCATTGAATCTATGCGAGTATTGAAAAGGCCAATGTGACTAGGGTACAATGGTAATTGCT
TTTGATGGTCATGAATTTTATGTTTAATGATTTCTCCTCATTAACAAGGAAATATCCACCATAA
AAAGGTAAACAGTGAAAATAAGCATAAGAATATCTGTTACAGTAAAGATACATTGTAATGTTGG
TCATTTATTAAAATGCATTGCTCTGACCTACCTTGATGTAAAAAGGCCCCAACCGGATCAAGGT
CTCCTGGAACTGAAATGAGTAAAATGAAAACCAGATACATGAAACTCAAAGTATAACAAGTACT
CGTAGAGAGTTAGGGTGTGTTCGGCTGCACGTTGCAGCCGGCCAGCCGCTGCAACACAGCCACA
CAGCTGTTTGTAGTGACACAAATTACTGTGCAAAATGGCTGTATCACAGCTGAAATAGGGCAGC
CGAACACACCCTTAGAGTAGGAAGAAAGGCAGAAAAGAAATACCTTCTCAGCCCGTTTGTGCAC
ATCACTGAGCAATAAATGCCAAATAGTGAGCTTCATAACATGAAAAGAGATAATTGCTGCCCTG
TACATTGCAAGGAATGGACCAAAGCCACGATCTGCAAATAGTGTACGTGAGCTTGAACCCAAGA
TCCTTCCAAACTGGCTTTCTAACGACTCCTTTCTGATCTTTGCATATTCTGAGGACGGTCTCTC
CCCATGAACACTTGAGAATGCACTAGAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.222087471
Functional Information
Coding potential Y
Potential coding position 16020915-16021061(-)
Potential amino acid sequence MYRAAIISFHVMKLTIWHLLLSDVHKRAEKFQETLIRLGPFYIKLGQALSTRPDILPNAYCQEL
SKLQDQIPPFPTRIAIRTIESQLGSRISDLFADISPEPVAAASLGQVYKAHLHSGELVAVKVQR
PGMTPLLTLDALLFHMIGGQLKRFAKARKDLLVAVNEIVRHMFDEIDYVLEGRNAERFARLYSH
DLGGNSSGDGTSIKVPKVYWNFTRKSILTLEWIDGIKLTDAERIGKANLNRKRMIDEGLYCSLR
QLLEEGFFHADPHPGNLVATEGGSLAYFDFGMMGDIPRHYRVGLIQMLF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017