Plant Circular RNA Database

Detail information of Os07g0459200_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os07g0459200_circ_g.1
					
						ID in PlantcircBase
						osa_circ_033679
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 16015688-16021067  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0459200						
					
						Parent gene annotation
						
							Similar to Possible kinase. (Os07t0459200-01);Similar to ubiquin
one biosynthesis protein ubiB. (Os07t0459200-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0459200_circ_g.2 Os07g0459200_circ_g.3 Os07g0459200_circ_g.4 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0459200-01:10
Os07t0459200-02:10

General Information
CircRNA Name	Os07g0459200_circ_g.1
ID in PlantcircBase	osa_circ_033679
Alias	NA
Organism	Oryza sativa
Position	chr7: 16015688-16021067 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0459200
Parent gene annotation	Similar to Possible kinase. (Os07t0459200-01);Similar to ubiquin one biosynthesis protein ubiB. (Os07t0459200-02)
Parent gene strand	-
Alternative splicing	Os07g0459200_circ_g.2 Os07g0459200_circ_g.3 Os07g0459200_circ_g.4
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0459200-01:10 Os07t0459200-02:10

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAAGATCCTTCCAAACTGGCTTTCTAACGACTCCTTTCTGATCTTTGCATATTCTGAGGACGGT
CTCTCCCCATGAACACTTGAGAATGCACTAGAAAAGcagccgctccagtcgattccatctgatg
gatccatcatcgcatatcaagagctgcctcaatattttcctcatatcagggctggggtcttcaa
gtagcctc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1384
Transcript exons: 16015688-16015948,16016211-16016360,16017807-16017870,16
018222-16018391,16018625-16018703,16019155-16019320,1601
9441-16019576,16020110-16020181,16020556-16020597,160208
24-16021067
CAGCCGCTCCAGTCGATTCCATCTGATGGATCCATCATCGCATATCAAGAGCTGCCTCAATATT
TTCCTCATATCAGGGCTGGGGTCTTCAAGTAGCCTCCCAATGACAAATGGGTATGCACTTTCAA
TAACTTTGAAGTCAGGATCCAATGCTTTTGCAGTCCCTTCTAAAGAACCCAGTGCTCTTATCAC
CAGTGCGTAATCCGGAGGAAGAGAGAAATTAAACTCATACATGACATCATACAGATGGCTCATC
ACCCCCTGAAAATCATTTGATTGCCTCCTTCCATCACCAAAGGAAACACGTAATGCATCAGCAA
CCCCATGTAGGTCTGTTCCCTCAGGGACAAACCCAAGTGAATGGAAGTCATTTGCCAAGCCCAA
GGAGTCACGGTTAACATAGTGCACAAGCTGGATGGGGGTCTGCATGGAAAAAGCCTTCTTCAAG
AAGCTGCCTCAATGAACAATAGAGACCCTCATCGATCATCCTTTTCCTGTTCAGATTGGCTTTG
CCAATGCGCTCAGCATCAGTGAGCTTGATCCCATCAATCCATTCTAGAGTTAATATAGATTTAC
GTGTAAAATTCCAGTAGACCTTTGGGACTTTGATACTTGTCCCATCTCCGGAGCTATTCCCACC
TAAATCATGAGAATAAAGTCTCGCAAATCTTTCAGCATTCCTTCCCTCTAAAACATAATCAATC
TCATCAAACATGTGCCTGACAATCTCATTGACTGCTACCAGTAAATCTTTGCGAGCCTTTGCAA
ACCGTTTCAACTGTCCTCCGATCATATGGAACAAAAGTGCATCTAGAGTCAGCAAGGGAGTCAT
TCCAGGCCTCTGAACTTTGACTGCGACAAGCTCTCCAGAGTGTAGATGAGCTGCATGACTTTAT
ATACTTGCCCCAGCGATGCTGCAGCAACTGGCTCTGGGCTGATATCAGCAAATAGATCAGAAAT
TCGAGAACCCAGTTGAGACTCAATAGTCCTGATTGCGATACGAGTAGGAAATGGTGGTATCTGG
TCCTGTAGCTTAGAGAGCTCTTGACAATATGCATTCGGCAATATATCAGGGCGTGTGCTCAATG
CTTGTCCAAGCTTGATGTAAAAAGGCCCCAACCGGATCAAGGTCTCCTGGAACTTCTCAGCCCG
TTTGTGCACATCACTGAGCAATAAATGCCAAATAGTGAGCTTCATAACATGAAAAGAGATAATT
GCTGCCCTGTACATTGCAAGGAATGGACCAAAGCCACGATCTGCAAATAGTGTACGTGAGCTTG
AACCCAAGATCCTTCCAAACTGGCTTTCTAACGACTCCTTTCTGATCTTTGCATATTCTGAGGA
CGGTCTCTCCCCATGAACACTTGAGAATGCACTAGAAAAG
Transcript length: 1474
Transcript exons: 16015688-16015948,16016211-16016360,16017709-16017870,16
018222-16018391,16018625-16018703,16019155-16019312,1601
9441-16019576,16020110-16020181,16020556-16020597,160208
24-16021067
CAGCCGCTCCAGTCGATTCCATCTGATGGATCCATCATCGCATATCAAGAGCTGCCTCAATATT
TTCCTCATATCAGGGCTGGGGTCTTCAAGTAGCCTCCCAATGACAAATGGGTATGCACTTTCAA
TAACTTTGAAGTCAGGATCCAATGCTTTTGCAGTCCCTTCTAAAGAACCCAGTGCTCTTATCAC
CAGTGCGTAATCCGGAGGAAGAGAGAAATTAAACTCATACATGACATCATACAGATGGCTCATC
ACCCCCTGAAAATCATTTGATTGCCTCCTTCCATCACCAAAGGAAACACGTAATGCATCAGCAA
CCCCATGTAGGTCTGTTCCCTCAGGGACAAACCCAAGTGAATGGAAGTCATTTGCCAAGCCCAA
GGAGTCACGGTTAACATAGTGCACAAGCATTTGTATAAGCCCTACACGATAGTGCCTTGGAATA
TCCCCCATCATACCAAAATCAAAATACGCGAGTGATCCACCTTCAGTTGCAACCAGATTACCTG
GATGGGGGTCTGCATGGAAAAAGCCTTCTTCAAGAAGCTGCCTCAATGAACAATAGAGACCCTC
ATCGATCATCCTTTTCCTGTTCAGATTGGCTTTGCCAATGCGCTCAGCATCAGTGAGCTTGATC
CCATCAATCCATTCTAGAGTTAATATAGATTTACGTGTAAAATTCCAGTAGACCTTTGGGACTT
TGATACTTGTCCCATCTCCGGAGCTATTCCCACCTAAATCATGAGAATAAAGTCTCGCAAATCT
TTCAGCATTCCTTCCCTCTAAAACATAATCAATCTCATCAAACATGTGCCTGACAATCTCATTG
ACTGCTACCAGTAAATCTTTGCGAGCCTTTGCAAACCGTTTCAACTGTCCTCCGATCATATGGA
ACAAAAGTGCATCTAGAGTCAGCAAGGGAGTCATTCCAGGCCTCTGAACTTTGACTGCGACAAG
CTCTCCAGAGTGTAGATGAGCTTTATATACTTGCCCCAGCGATGCTGCAGCAACTGGCTCTGGG
CTGATATCAGCAAATAGATCAGAAATTCGAGAACCCAGTTGAGACTCAATAGTCCTGATTGCGA
TACGAGTAGGAAATGGTGGTATCTGGTCCTGTAGCTTAGAGAGCTCTTGACAATATGCATTCGG
CAATATATCAGGGCGTGTGCTCAATGCTTGTCCAAGCTTGATGTAAAAAGGCCCCAACCGGATC
AAGGTCTCCTGGAACTTCTCAGCCCGTTTGTGCACATCACTGAGCAATAAATGCCAAATAGTGA
GCTTCATAACATGAAAAGAGATAATTGCTGCCCTGTACATTGCAAGGAATGGACCAAAGCCACG
ATCTGCAAATAGTGTACGTGAGCTTGAACCCAAGATCCTTCCAAACTGGCTTTCTAACGACTCC
TTTCTGATCTTTGCATATTCTGAGGACGGTCTCTCCCCATGAACACTTGAGAATGCACTAGAAA
AG
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	CAAGATCCTTCCAAACTGGCTTTCTAACGACTCCTTTCTGATCTTTGCATATTCTGAGGACGGT CTCTCCCCATGAACACTTGAGAATGCACTAGAAAAGcagccgctccagtcgattccatctgatg gatccatcatcgcatatcaagagctgcctcaatattttcctcatatcagggctggggtcttcaa gtagcctc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1384 Transcript exons: 16015688-16015948,16016211-16016360,16017807-16017870,16 018222-16018391,16018625-16018703,16019155-16019320,1601 9441-16019576,16020110-16020181,16020556-16020597,160208 24-16021067 CAGCCGCTCCAGTCGATTCCATCTGATGGATCCATCATCGCATATCAAGAGCTGCCTCAATATT TTCCTCATATCAGGGCTGGGGTCTTCAAGTAGCCTCCCAATGACAAATGGGTATGCACTTTCAA TAACTTTGAAGTCAGGATCCAATGCTTTTGCAGTCCCTTCTAAAGAACCCAGTGCTCTTATCAC CAGTGCGTAATCCGGAGGAAGAGAGAAATTAAACTCATACATGACATCATACAGATGGCTCATC ACCCCCTGAAAATCATTTGATTGCCTCCTTCCATCACCAAAGGAAACACGTAATGCATCAGCAA CCCCATGTAGGTCTGTTCCCTCAGGGACAAACCCAAGTGAATGGAAGTCATTTGCCAAGCCCAA GGAGTCACGGTTAACATAGTGCACAAGCTGGATGGGGGTCTGCATGGAAAAAGCCTTCTTCAAG AAGCTGCCTCAATGAACAATAGAGACCCTCATCGATCATCCTTTTCCTGTTCAGATTGGCTTTG CCAATGCGCTCAGCATCAGTGAGCTTGATCCCATCAATCCATTCTAGAGTTAATATAGATTTAC GTGTAAAATTCCAGTAGACCTTTGGGACTTTGATACTTGTCCCATCTCCGGAGCTATTCCCACC TAAATCATGAGAATAAAGTCTCGCAAATCTTTCAGCATTCCTTCCCTCTAAAACATAATCAATC TCATCAAACATGTGCCTGACAATCTCATTGACTGCTACCAGTAAATCTTTGCGAGCCTTTGCAA ACCGTTTCAACTGTCCTCCGATCATATGGAACAAAAGTGCATCTAGAGTCAGCAAGGGAGTCAT TCCAGGCCTCTGAACTTTGACTGCGACAAGCTCTCCAGAGTGTAGATGAGCTGCATGACTTTAT ATACTTGCCCCAGCGATGCTGCAGCAACTGGCTCTGGGCTGATATCAGCAAATAGATCAGAAAT TCGAGAACCCAGTTGAGACTCAATAGTCCTGATTGCGATACGAGTAGGAAATGGTGGTATCTGG TCCTGTAGCTTAGAGAGCTCTTGACAATATGCATTCGGCAATATATCAGGGCGTGTGCTCAATG CTTGTCCAAGCTTGATGTAAAAAGGCCCCAACCGGATCAAGGTCTCCTGGAACTTCTCAGCCCG TTTGTGCACATCACTGAGCAATAAATGCCAAATAGTGAGCTTCATAACATGAAAAGAGATAATT GCTGCCCTGTACATTGCAAGGAATGGACCAAAGCCACGATCTGCAAATAGTGTACGTGAGCTTG AACCCAAGATCCTTCCAAACTGGCTTTCTAACGACTCCTTTCTGATCTTTGCATATTCTGAGGA CGGTCTCTCCCCATGAACACTTGAGAATGCACTAGAAAAG Transcript length: 1474 Transcript exons: 16015688-16015948,16016211-16016360,16017709-16017870,16 018222-16018391,16018625-16018703,16019155-16019312,1601 9441-16019576,16020110-16020181,16020556-16020597,160208 24-16021067 CAGCCGCTCCAGTCGATTCCATCTGATGGATCCATCATCGCATATCAAGAGCTGCCTCAATATT TTCCTCATATCAGGGCTGGGGTCTTCAAGTAGCCTCCCAATGACAAATGGGTATGCACTTTCAA TAACTTTGAAGTCAGGATCCAATGCTTTTGCAGTCCCTTCTAAAGAACCCAGTGCTCTTATCAC CAGTGCGTAATCCGGAGGAAGAGAGAAATTAAACTCATACATGACATCATACAGATGGCTCATC ACCCCCTGAAAATCATTTGATTGCCTCCTTCCATCACCAAAGGAAACACGTAATGCATCAGCAA CCCCATGTAGGTCTGTTCCCTCAGGGACAAACCCAAGTGAATGGAAGTCATTTGCCAAGCCCAA GGAGTCACGGTTAACATAGTGCACAAGCATTTGTATAAGCCCTACACGATAGTGCCTTGGAATA TCCCCCATCATACCAAAATCAAAATACGCGAGTGATCCACCTTCAGTTGCAACCAGATTACCTG GATGGGGGTCTGCATGGAAAAAGCCTTCTTCAAGAAGCTGCCTCAATGAACAATAGAGACCCTC ATCGATCATCCTTTTCCTGTTCAGATTGGCTTTGCCAATGCGCTCAGCATCAGTGAGCTTGATC CCATCAATCCATTCTAGAGTTAATATAGATTTACGTGTAAAATTCCAGTAGACCTTTGGGACTT TGATACTTGTCCCATCTCCGGAGCTATTCCCACCTAAATCATGAGAATAAAGTCTCGCAAATCT TTCAGCATTCCTTCCCTCTAAAACATAATCAATCTCATCAAACATGTGCCTGACAATCTCATTG ACTGCTACCAGTAAATCTTTGCGAGCCTTTGCAAACCGTTTCAACTGTCCTCCGATCATATGGA ACAAAAGTGCATCTAGAGTCAGCAAGGGAGTCATTCCAGGCCTCTGAACTTTGACTGCGACAAG CTCTCCAGAGTGTAGATGAGCTTTATATACTTGCCCCAGCGATGCTGCAGCAACTGGCTCTGGG CTGATATCAGCAAATAGATCAGAAATTCGAGAACCCAGTTGAGACTCAATAGTCCTGATTGCGA TACGAGTAGGAAATGGTGGTATCTGGTCCTGTAGCTTAGAGAGCTCTTGACAATATGCATTCGG CAATATATCAGGGCGTGTGCTCAATGCTTGTCCAAGCTTGATGTAAAAAGGCCCCAACCGGATC AAGGTCTCCTGGAACTTCTCAGCCCGTTTGTGCACATCACTGAGCAATAAATGCCAAATAGTGA GCTTCATAACATGAAAAGAGATAATTGCTGCCCTGTACATTGCAAGGAATGGACCAAAGCCACG ATCTGCAAATAGTGTACGTGAGCTTGAACCCAAGATCCTTCCAAACTGGCTTTCTAACGACTCC TTTCTGATCTTTGCATATTCTGAGGACGGTCTCTCCCCATGAACACTTGAGAATGCACTAGAAA AG
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.214703772

Conservation Information
Conserved circRNAs	NA
PMCS	0.214703772

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							16015711-16020993(-)
16017826-16021061(-)
16015727-16019261(-)
						
						Potential amino acid sequence
						
							MESTGAAAFLVHSQVFMGRDRPQNMQRSERSR*(-)
MQTPIQLVHYVNRDSLGLANDFHSLGFVPEGTDLHGVADALRVSFGDGRRQSNDFQGVMSHLYD
VMYEFNFSLPPDYALVIRALGSLEGTAKALDPDFKVIESAYPFVIGRLLEDPSPDMRKILRQLL
ICDDGSIRWNRLERLLF*(-)
MMDPSDGIDWSGCFSSAFSSVHGERPSSEYAKIRKESLESQFGRILGSSSRTLFADRGFGPFLA
MYRAAIISFHVMKLTIWHLLLSDVHKRAEKFQETLIRLGPFYIKLGQALSTRPDILPNAYCQEL
SKLQDQIPPFPTRIAIRTIESQLGSRISDLFADISPEPVAAASLGQVYKVMQLIYTLESLSQSK
FRGLE*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	16015711-16020993(-) 16017826-16021061(-) 16015727-16019261(-)
Potential amino acid sequence	MESTGAAAFLVHSQVFMGRDRPQNMQRSERSR(-) MQTPIQLVHYVNRDSLGLANDFHSLGFVPEGTDLHGVADALRVSFGDGRRQSNDFQGVMSHLYD VMYEFNFSLPPDYALVIRALGSLEGTAKALDPDFKVIESAYPFVIGRLLEDPSPDMRKILRQLL ICDDGSIRWNRLERLLF(-) MMDPSDGIDWSGCFSSAFSSVHGERPSSEYAKIRKESLESQFGRILGSSSRTLFADRGFGPFLA MYRAAIISFHVMKLTIWHLLLSDVHKRAEKFQETLIRLGPFYIKLGQALSTRPDILPNAYCQEL SKLQDQIPPFPTRIAIRTIESQLGSRISDLFADISPEPVAAASLGQVYKVMQLIYTLESLSQSK FRGLE*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0459200_circ_g.1

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