Detail information of Os02g0316900_circ_g.1


General Information
CircRNA Name Os02g0316900_circ_g.1
ID in PlantcircBase osa_circ_014449
Alias Os_ciR7654
Organism Oryza sativa
Position chr2: 12573536-12576603  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os02g0316900
Parent gene annotation B-block binding subunit of TFIIIC domain containing protein. (Os
02t0316900-01);B-block binding subunit of TFIIIC domain containi
ng protein. (Os02t0316900-02)
Parent gene strand +
Alternative splicing Os02g0316900_circ_g.2 Os02g0316900_circ_g.3 Os02g0316900_circ_g.4 Os02g0316900_circ_g.5
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os02t0316900-02:3
Os02t0316900-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTCTTTCAGATAAAGTTGCCTTTCAGAGGAAGAGGCATTGCTGGCCCACGTCAATTTCTGAT
GATCGAAGACAGAAAAGGATTATTCACATATTAAAGattgttcactgcttacgtcttctgaaga
gatttaatccagatgagtttaagccaaaaggtacaatctcaaactacaaacttggcaagaaagg
cctggaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 648
Transcript exons: 12573536-12573721,12575706-12576078,12576515-12576603
ATTGTTCACTGCTTACGTCTTCTGAAGAGATTTAATCCAGATGAGTTTAAGCCAAAAGGTACAA
TCTCAAACTACAAACTTGGCAAGAAAGGCCTGGAAACTGATCAAGTCATGGAGCTTCCATTAGA
CAACTGTATATATGATATGATCGATGCTCAAGGGCCAAAAGGCATAACCCTTATTGAGCTTGGC
AAACGTCTTGGGGGAAAGTACAACAATTCGAAAGAGCTCCATGATCGAGTATCATCTATGCATG
ATAGATTCAATCTGACTGTGGAGGTTGAAGTCGTTGGCAAAAGTAAACAGGGCAGAGTTTGGAC
TTCAAAAAATTTTTCGCTGTACAATGCTACTCTGCGAAATTGTGATGTGCCAGATGATCATGAC
TATTGTTCAGTATGGCCTCTCATTCCTTCTGAAGAACCGACTTCTGTTAGCCCATATGGTTTTG
TGGTTAATAACAAACTCTTGTTTGAAGAAGATTGTCATGATGAACCACCCGTACATCGTCTCCT
GAATAGCCATGAAGCTTGTGTTGGAGTTTCTCAACCAGTTGAACAAGATAAAGTTGCCTTTCAG
AGGAAGAGGCATTGCTGGCCCACGTCAATTTCTGATGATCGAAGACAGAAAAGGATTATTCACA
TATTAAAG

Genomic sequence ATTGTTCACTGCTTACGTCTTCTGAAGAGATTTAATCCAGATGAGTTTAAGCCAAAAGGTACAA
TCTCAAACTACAAACTTGGCAAGAAAGGCCTGGAAACTGATCAAGTCATGGAGCTTCCATTAGA
CAACTGTATATATGATATGATCGATGCTCAAGGGCCAAAAGGCATAACCCTTATTGAGGTACCT
CTCTGGACCTTTCAGCGGGGGAACTTTGGTGTAATATTCTTTTTTAATTATATATGCTAAATTT
CTTCACAGCAACAAGAGTGCCTTCATATTCCTTGTTTCCAGAGTGCTATTCAGCATAATTTAAT
GATTGAAAATATTCTTCATCTAACTTCCTCTGAGCTATTTGCGAACATATTGAAAATATTATCG
AACAAAAAAAGAAATAATACCTCCCAAAAAACAAATTAACATTTACAGAAGGTCTGTGGCTCCA
AGCTGCCCCACTGCCCAATGAAGGTTGGAATAGACCTTGCCACCACTTTTATAGTTCGTTTTTG
TCGTTGCAAGTTTGGTATTTTTTTCTCTAGGTTGTGACTGAGAGGTTGGACACAATTGCAACAA
CGACTGGGACTGGGTGTGGCGGTAGGTCGAGGGTTAAGGCTGCAACATTAGTTGAGCATAGTGG
TTGAGGCATCAAATGGGCTGCTGCTGTGGAGCATCTGTGGTGTCGGCACCAAGAATAATGGCGA
AGGCAAGAGGGCATGGTGGAACTGCTGCCATGGAGCATCTTTGTGGTGTTGGTCAAGAATAATG
GTGAAGGCAAGAGGGCATGATGGAGCATGGGTAGTGATTGAGCAGAACGGAGGAGATTGTGCAG
GTCGTAGGCAATGATAGCAGCTTGACATGTTATTGTGATATGACTTTTTCTTATCCGTGTTGAT
GCTTGTGCATGAATCTAGTGAGCTAAAATTGTATGCGCTCAAACAAATTTGATAGAAGACTTCA
ATATCATTCTGAAGACCTTTGTGGTCAGCGACTCAGCGTTGTTATCCCTCAATATGGGAGTTTC
ATAAGCAATATAACAATTCACACATTTTGAAACTATTGTTTCCCTAATGGGCCCTTATCATTTC
AAGCTAGTTGTTGTTGTTGTTATTTGGGGTTGGGAGAGGGGGGGTGGTAAATTCACTCTGGTCT
AGGCTAGGGCCTGTGCGTACAGTTTCCAAATAATGATCATATACTCTATGTCTTGAAAAGAGCC
AAAATTGTGATCTTGCTATCTTCAAACTATATAAAACATATCGTCCACATGTACACCTGTCCAC
AGTTGTTTATGATGTAATTGTTTTTTTACCATTCTAGAAGTCGCACACATGTCTACATAAATCC
ATCCACACAAGGTCAGCATACAGCGCACCAGCACCAGGGATGACTTGCTGTCTGTGTCTCACCA
GGGGTTAAATCTCCAAAATAGATTTCAAGCCTAGCCGCTATGAACCACAATGGTCCTGGTGACA
TGACTGTCGCCGCCTCAGAAACTTGTGATATGTATAGTGTGCTTCCAAATGATGGAGTAGAGAC
TCAAAAGAGGGAAAAAACACTCTTTATGTAGTAGAATTGTAGAAATATGACCTTTGATAGAGTC
TATACATCTGAGCTATCAGTAATCTCTCTATCTTATATCTTATGGGCAAGCAAATGCAAGCCTA
TGACTATCCGGTGCAGCTTATCATGAGATGTTAGCCAGTTTTAGTCCTGCGCTGATTCTGTGTT
GTATTTGGCTCATTTCTAGCATCATAACTTTTTTTTTGTTTGAGCTGCATTTCTAGCATCACAA
GCATTTCTTTGTTTTTGTTTGAGCTACAATGGCATTAACTAATTTATTTCGTCCCGAACTTAAA
TGAGATAGATATAAAATTCTTGCAATGACATTATCCTTCTTGGTGTAATCCCTAATGAAAATAG
GCAAAACTCCCTGTCATGAAGACAATAATATATGGGCACATAAAGTTGGTTGAGTGTTGTTTTC
TTTTCTCTAGTATGAATACATTTTTTCTGTTGAGGAAATTTCTTTGTTCATATTTGAGCTTTTA
GAACCTAAGTATATTTATTTGAGATCCATCACAGCTGTATATTTATTTGCCTTTATTATTTTTA
TATTATTGTTGTTGTTTATTGAAATCAGCAACTCTTGTTCTCATTAATTTCCAATCAGCTTGGC
AAACGTCTTGGGGGAAAGTACAACAATTCGAAAGAGCTCCATGATCGAGTATCATCTATGCATG
ATAGATTCAATCTGACTGTGGAGGTTGAAGTCGTTGGCAAAAGTAAACAGGGCAGAGTTTGGAC
TTCAAAAAATTTTTCGCTGTACAATGCTACTCTGCGAAATTGTGATGTGCCAGATGATCATGAC
TATTGTTCAGTATGGCCTCTCATTCCTTCTGAAGAACCGACTTCTGTTAGCCCATATGGTTTTG
TGGTTAATAACAAACTCTTGTTTGAAGAAGATTGTCATGATGAACCACCCGTACATCGTCTCCT
GAATAGCCATGAAGCTTGTGTTGGAGTTTCTCAACCAGTTGAACAAGGTACATCATTCTAAATT
CCTGTCAGTTCTTTTTTTCTCTCTCTAAAATAGTGACACGATCATGCATTACAATGGGCCCATA
TGACTGGGAATAGGCTGGGGGTGTGCATGTAGGATAAAACACATGATCCAACTTTTGTTTTTCT
GTTAACCAACCACTTGGTTTTCTATCTTGTTTATCTGAAGAGGTGTTGGTACAACATGAGGGGA
GGGTTGGACGGATGATTCCCCTTTTTATAGTAAGAAATTGTGCTTAGTGTTTCTTTGGAAACTA
CTGTGCTGCTGTAAGAGCTTGTGGTCTCTGTGCCCATAGATCCAAAAGGCCCATAGAAAACCTA
GAGTTTCAATCTTTGATGCATGAGCACCTTATTGAAATCAACAGAGTAGGACAGAGTACAGTTT
TGCTCAATTAAGGTGATCCTTTTTTTTTCTTTCAGATAAAGTTGCCTTTCAGAGGAAGAGGCAT
TGCTGGCCCACGTCAATTTCTGATGATCGAAGACAGAAAAGGATTATTCACATATTAAAG
Conservation Information
Conserved circRNAs osi_circ_011589
PMCS 0.208299527
Functional Information
Coding potential Y
Potential coding position 12573648-12576600(+)
Potential amino acid sequence MELPLDNCIYDMIDAQGPKGITLIELGKRLGGKYNNSKELHDRVSSMHDRFNLTVEVEVVGKSK
QGRVWTSKNFSLYNATLRNCDVPDDHDYCSVWPLIPSEEPTSVSPYGFVVNNKLLFEEDCHDEP
PVHRLLNSHEACVGVSQPVEQDKVAFQRKRHCWPTSISDDRRQKRIIHILKIVHCLRLLKRFNP
DEFKPKGTISNYKLGKKGLETDQVMELPLDNCIYDMIDAQGPKGITLIELGKRLGGKYNNSKEL
HDRVSSMHDRFNLTVEVEVVGKSKQGRVWTSKNFSLYNATLRNCDVPDDHDYCSVWPLIPSEEP
TSVSPYGFVVNNKLLFEEDCHDEPPVHRLLNSHEACVGVSQPVEQDKVAFQRKRHCWPTSISDD
RRQKRIIHILKIVHCLRLLKRFNPDEFKPKGTISNYKLGKKGLETDQVMELPLDNCIYDMIDAQ
GPKGITLIELGKRLGGKYNNSKELHDRVSSMHDRFNLTVEVEVVGKSKQGRVWTSKNFSLYNAT
LRNCDVPDDHDYCSVWPLIPSEEPTSVSPYGFVVNNKLLFEEDCHDEPPVHRLLNSHEACVGVS
QPVEQDKVAFQRKRHCWPTSISDDRRQKRIIHILKIVHCLRLLKRFNPDEFKPKGTISNYKLGK
KGLETDQVMELPLDNCIYDMIDAQGPKGITLIELGKRLGGKYNNSKELHDRVSSMHDRFNLTVE
VEVVGKSKQGRVWTSKNFSLYNATLRNCDVPDDHDYCSVWPLIPSEEPTSVSPYGFVVNNKLLF
EEDCHDEPPVHRLLNSHEACVGVSQPVEQDKVAFQRKRHCWPTSISDDRRQKRIIHILK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015