Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os02g0316900_circ_g.3 |
ID in PlantcircBase | osa_circ_014451 |
Alias | Os02circ11657/Os_ciR1764 |
Organism | Oryza sativa |
Position | chr2: 12575706-12576603 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, SMALT, Segemehl, find_circ |
Parent gene | Os02g0316900 |
Parent gene annotation |
B-block binding subunit of TFIIIC domain containing protein. (Os 02t0316900-01);B-block binding subunit of TFIIIC domain containi ng protein. (Os02t0316900-02) |
Parent gene strand | + |
Alternative splicing | Os02g0316900_circ_g.1 Os02g0316900_circ_g.2 Os02g0316900_circ_g.4 Os02g0316900_circ_g.5 |
Support reads | 2/8/2 |
Tissues | panicle/root/shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os02t0316900-02:2 Os02t0316900-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_003858* osi_circ_011591 |
PMCS | 0.362136405 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
12575770-12576600(+) 12575768-12576589(-) |
Potential amino acid sequence |
MHDRFNLTVEVEVVGKSKQGRVWTSKNFSLYNATLRNCDVPDDHDYCSVWPLIPSEEPTSVSPY GFVVNNKLLFEEDCHDEPPVHRLLNSHEACVGVSQPVEQDKVAFQRKRHCWPTSISDDRRQKRI IHILKLGKRLGGKYNNSKELHDRVSSMHDRFNLTVEVEVVGKSKQGRVWTSKNFSLYNATLRNC DVPDDHDYCSVWPLIPSEEPTSVSPYGFVVNNKLLFEEDCHDEPPVHRLLNSHEACVGVSQPVE QDKVAFQRKRHCWPTSISDDRRQKRIIHILKLGKRLGGKYNNSKELHDRVSSMHDRFNLTVEVE VVGKSKQGRVWTSKNFSLYNATLRNCDVPDDHDYCSVWPLIPSEEPTSVSPYGFVVNNKLLFEE DCHDEPPVHRLLNSHEACVGVSQPVEQDKVAFQRKRHCWPTSISDDRRQKRIIHILKLGKRLGG KYNNSKELHDRVSSMHDRFNLTVEVEVVGKSKQGRVWTSKNFSLYNATLRNCDVPDDHDYCSVW PLIPSEEPTSVSPYGFVVNNKLLFEEDCHDEPPVHRLLNSHEACVGVSQPVEQDKVAFQRKRHC WPTSISDDRRQKRIIHILK(+) MILDHGALSNCCTFPQDVCQALICE*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Ye et al., 2015;Chu et al., 2017 |