Plant Circular RNA Database

Detail information of Os10g0105400_circ_g.8

			
						 General Information
					
						CircRNA Name
						Os10g0105400_circ_g.8
					
						ID in PlantcircBase
						osa_circ_006102
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr10: 410745-413525  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os10g0105400						
					
						Parent gene annotation
						
							Hypothetical conserved gene. (Os10t0105400-01);Conserved hypothe
tical protein. (Os10t0105400-02);Conserved hypothetical protein.
 (Os10t0105400-04)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os10g0105400_circ_g.4 Os10g0105400_circ_g.5 Os10g0105400_circ_g.6 Os10g0105400_circ_g.7 Os10g0105400_circ_g.9 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os10t0105400-02:2

General Information
CircRNA Name	Os10g0105400_circ_g.8
ID in PlantcircBase	osa_circ_006102
Alias	NA
Organism	Oryza sativa
Position	chr10: 410745-413525 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os10g0105400
Parent gene annotation	Hypothetical conserved gene. (Os10t0105400-01);Conserved hypothe tical protein. (Os10t0105400-02);Conserved hypothetical protein. (Os10t0105400-04)
Parent gene strand	-
Alternative splicing	Os10g0105400_circ_g.4 Os10g0105400_circ_g.5 Os10g0105400_circ_g.6 Os10g0105400_circ_g.7 Os10g0105400_circ_g.9
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os10t0105400-02:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAGCTATTACTGGGCTAATCCACCCTCTTTCTCCTCCACCACATGCATCAGGATAAAGCATTTC
CCGTTCACGCTCCCTCGCCCGTGCATTGTCAAATATctcacaccggaaagctgtatcagtaatg
cagaaccagctagtgcagtgatgttcccgtcgcagacgctttaattctttcagttccttaaatt
cacgaatg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 402
Transcript exons: 410745-410886,413266-413525
CTCACACCGGAAAGCTGTATCAGTAATGCAGAACCAGCTAGTGCAGTGATGTTCCCGTCGCAGA
CGCTTTAATTCTTTCAGTTCCTTAAATTCACGAATGACATTCCTTCGGCAATCTCTGCAAAATC
TTTTGCTGTCGAACCTATGCATAAGTCTTTCAATGAAATCTTCTTCCCTCATCCGCAGAAGAGA
TGATCTAGTTTCTTCACACAGGTCAAACCAGTAACCCACCAGAGCATCACAAGAAAGGCGTGCA
GTGTGCAAAGCACATGTGTCTCGTGTTCCATGCCCCCTGCCATAATTAGCTATTACTGGGCTAA
TCCACCCTCTTTCTCCTCCACCACATGCATCAGGATAAAGCATTTCCCGTTCACGCTCCCTCGC
CCGTGCATTGTCAAATAT
						
					

						Genomic sequence
						
							CTCACACCGGAAAGCTGTATCAGTAATGCAGAACCAGCTAGTGCAGTGATGTTCCCGTCGCAGA
CGCTTTAATTCTTTCAGTTCCTTAAATTCACGAATGACATTCCTTCGGCAATCTCTGCAAAATC
TTTTGCTGTCGAACCTGTCCAGATATTCATCCACAGAATTAGCTAAATATTACACACCAAACCA
GCCTGTGAAGAGCATAAAAGTCTATTAAGCATTCTTCCAATCACAAGTCGTAACTATCCCACAT
ATACTAAGGGTGGTTGGAGGGATATCCTTAGATAGGAGTTGGCGATCCAACTTTTGAGTGTGTT
TGGTTGGTGCCTTGGTGGGCAAGGGTGGATGGGGTGGTCAGGAGAGGGAATATTCCACGAAGAT
GCTGGATGAGCTCATTTGGCCCACCTTTGCTAATCTCAATTCATTACTACCTCCGTCCCATTTT
AAGTGCAGTTGTGGGTTTCTGTGTCCAACGTTTGACTGTCCGTCTTATTTGATAAGTTTATGAA
AAAATAAAAAAAAATAGTCACACATAAAGTATTATTCATGTTTTATCATCTAATAACAATAAAA
ATAGTAATCGTAAAAGTTTTTCAAATAAGACGGACGGTTAAACGTTGGACATAAACAATGCAAA
ACTGCAGTCTTTCTGGGACGGAGGTAGTAGTAATTTATTAGCAATAATTAATAACTTTTGTTGT
TAATTACTCCCTCATTCCCACATTGATCATCATATAATGAAATTCAAAATCTCTCAAATTGATC
ATCATATAACTGCATGGACATGGATTTCATCGAAATAGAATTAATGCAGCATGGGAGAATGTGT
GAATGCTAGGGTGTAATTGGCATGGTGTTTTAATCGATGCATGCATTGTGGGAGAATGTGTGCA
TGGTATCTTGATTGATGCGATTTAAATTATTCTTGGTCTTGAGGTTTAGTGCTTTACTCCCTCC
ATTCCATAATATAAGACACAACTACTTTTTTAGATGTTTCATAATATAAGGCGTGCATGCATGC
ATGCATGCAATTAGTAACTCCTCTCCACTAAATTATTATTTTTTAAATCCTCCACCTTCGAGAT
CTCTAATTCTATTGGGTGTATTATATTTATTAGGGTGATCCAAACTAGGAGGTGATAATAATTG
TTTCTTGATCTTTGGGTTAAGGATGGTTGTGCCTTATATTTTGGAAGGGAGAGAGTATATACAA
TTAATCTATTTTGTTGTTAATTAGTATAGAATATGCTAAGATTAATGATAATTAATATACTTTC
TTATTAATTAATAGTTTATTGTTATCAATCCATCCATCCTCATCCATCTAATCATACAAGAAAC
TGGATGGCCATATCCACGCAACAAAACAAAAAGTTGGATCACCATATCCCTGAAAATATGGATG
GCCATATCCTATCCAACCTTGGCCATGAACCAAGCATACCCTAAGTGAAATGCAGTCACTCGGA
ACATAGCAGACCAAAAGTTTCCCACAAAGTCCGGATATAAAAAACATATTATTGCAACTATACT
ACTACCTCCGTTTTTTAATAGATGACGCCGTTAACTTTTTCTCACATGTTTGACCATTCGTCTT
ATTCAAAAATTTTATGCAAATGTATAAGATATAAATCACACTTAAAGTATTATGAGTGATATAA
CAACTCATAACAAAATAAATTATAATTACGTAAATTTTTTGAATAAGACGAATGGTCAAACATG
TGAGAAAAAGTCAACGGCGTCATCTATTAAAAAACGGAGCGAGTATGTAGTTATCCTCATAATC
CGATTTAGAAACTGCTGGTAAGCAGTAACTATTTGAATAGGAAAAAAAACAAATATCCTTTTTG
AATCACAGAGAAACATCGACTTCTACCAAAGTACACAAAATTGCACACCAAGGTACCATAGCAC
TTACATGAACCATACAAATCTAACCATTTGTAAATAAAGCTTTCGTTTTCCTAGTGCAATGATG
CATTATTGCTTTATAAGTAACGAGAACTAATAAAAAAACGACTAATAGTACTCCCCCAAACATT
AAAAACTCAAAAGACGCCCTCATCAGATCAAGGAGCAAATAGATAAAGCGATGTAACAAAAAAC
CTCCCTTCAATCACAAATGTAGGGGGAAATTTTGTCTTGGACATGTACAAAGGAGGTTTTGGAT
AGGACTAAATTACCATAATATATTAGCTCTAAGCACAACATTCAATGGAAGCATGCAAGGAGGC
TGGAATGTTAGATATGGCCTGCATTTGTGAACAACGCCATTGGAAAAATGCGCCATGCACCCAC
ACAATTATGGATGGAGGCATTAGTACACAAAATCATCCCAATTGATGATAGCATACTTGTGTTG
ACAGTAGTTGATTCCTTACTGGGGAAAGCAAATAAAGTTTTTGGGCTATTATACTCTTACTCCA
GCTAGATAGATTTGTTCACATGCTTAACTGTGCATCAATTTCATGATCTTTAATCTTGTATCAA
ACAAACTGTACTTGGTTGCACTCACCTATGCATAAGTCTTTCAATGAAATCTTCTTCCCTCATC
CGCAGAAGAGATGATCTAGTTTCTTCACACAGGTCAAACCAGTAACCCACCAGAGCATCACAAG
AAAGGCGTGCAGTGTGCAAAGCACATGTGTCTCGTGTTCCATGCCCCCTGCCATAATTAGCTAT
TACTGGGCTAATCCACCCTCTTTCTCCTCCACCACATGCATCAGGATAAAGCATTTCCCGTTCA
CGCTCCCTCGCCCGTGCATTGTCAAATAT
						
					

			
		

Sequences
Splice junction sequence	TAGCTATTACTGGGCTAATCCACCCTCTTTCTCCTCCACCACATGCATCAGGATAAAGCATTTC CCGTTCACGCTCCCTCGCCCGTGCATTGTCAAATATctcacaccggaaagctgtatcagtaatg cagaaccagctagtgcagtgatgttcccgtcgcagacgctttaattctttcagttccttaaatt cacgaatg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 402 Transcript exons: 410745-410886,413266-413525 CTCACACCGGAAAGCTGTATCAGTAATGCAGAACCAGCTAGTGCAGTGATGTTCCCGTCGCAGA CGCTTTAATTCTTTCAGTTCCTTAAATTCACGAATGACATTCCTTCGGCAATCTCTGCAAAATC TTTTGCTGTCGAACCTATGCATAAGTCTTTCAATGAAATCTTCTTCCCTCATCCGCAGAAGAGA TGATCTAGTTTCTTCACACAGGTCAAACCAGTAACCCACCAGAGCATCACAAGAAAGGCGTGCA GTGTGCAAAGCACATGTGTCTCGTGTTCCATGCCCCCTGCCATAATTAGCTATTACTGGGCTAA TCCACCCTCTTTCTCCTCCACCACATGCATCAGGATAAAGCATTTCCCGTTCACGCTCCCTCGC CCGTGCATTGTCAAATAT
Genomic sequence	CTCACACCGGAAAGCTGTATCAGTAATGCAGAACCAGCTAGTGCAGTGATGTTCCCGTCGCAGA CGCTTTAATTCTTTCAGTTCCTTAAATTCACGAATGACATTCCTTCGGCAATCTCTGCAAAATC TTTTGCTGTCGAACCTGTCCAGATATTCATCCACAGAATTAGCTAAATATTACACACCAAACCA GCCTGTGAAGAGCATAAAAGTCTATTAAGCATTCTTCCAATCACAAGTCGTAACTATCCCACAT ATACTAAGGGTGGTTGGAGGGATATCCTTAGATAGGAGTTGGCGATCCAACTTTTGAGTGTGTT TGGTTGGTGCCTTGGTGGGCAAGGGTGGATGGGGTGGTCAGGAGAGGGAATATTCCACGAAGAT GCTGGATGAGCTCATTTGGCCCACCTTTGCTAATCTCAATTCATTACTACCTCCGTCCCATTTT AAGTGCAGTTGTGGGTTTCTGTGTCCAACGTTTGACTGTCCGTCTTATTTGATAAGTTTATGAA AAAATAAAAAAAAATAGTCACACATAAAGTATTATTCATGTTTTATCATCTAATAACAATAAAA ATAGTAATCGTAAAAGTTTTTCAAATAAGACGGACGGTTAAACGTTGGACATAAACAATGCAAA ACTGCAGTCTTTCTGGGACGGAGGTAGTAGTAATTTATTAGCAATAATTAATAACTTTTGTTGT TAATTACTCCCTCATTCCCACATTGATCATCATATAATGAAATTCAAAATCTCTCAAATTGATC ATCATATAACTGCATGGACATGGATTTCATCGAAATAGAATTAATGCAGCATGGGAGAATGTGT GAATGCTAGGGTGTAATTGGCATGGTGTTTTAATCGATGCATGCATTGTGGGAGAATGTGTGCA TGGTATCTTGATTGATGCGATTTAAATTATTCTTGGTCTTGAGGTTTAGTGCTTTACTCCCTCC ATTCCATAATATAAGACACAACTACTTTTTTAGATGTTTCATAATATAAGGCGTGCATGCATGC ATGCATGCAATTAGTAACTCCTCTCCACTAAATTATTATTTTTTAAATCCTCCACCTTCGAGAT CTCTAATTCTATTGGGTGTATTATATTTATTAGGGTGATCCAAACTAGGAGGTGATAATAATTG TTTCTTGATCTTTGGGTTAAGGATGGTTGTGCCTTATATTTTGGAAGGGAGAGAGTATATACAA TTAATCTATTTTGTTGTTAATTAGTATAGAATATGCTAAGATTAATGATAATTAATATACTTTC TTATTAATTAATAGTTTATTGTTATCAATCCATCCATCCTCATCCATCTAATCATACAAGAAAC TGGATGGCCATATCCACGCAACAAAACAAAAAGTTGGATCACCATATCCCTGAAAATATGGATG GCCATATCCTATCCAACCTTGGCCATGAACCAAGCATACCCTAAGTGAAATGCAGTCACTCGGA ACATAGCAGACCAAAAGTTTCCCACAAAGTCCGGATATAAAAAACATATTATTGCAACTATACT ACTACCTCCGTTTTTTAATAGATGACGCCGTTAACTTTTTCTCACATGTTTGACCATTCGTCTT ATTCAAAAATTTTATGCAAATGTATAAGATATAAATCACACTTAAAGTATTATGAGTGATATAA CAACTCATAACAAAATAAATTATAATTACGTAAATTTTTTGAATAAGACGAATGGTCAAACATG TGAGAAAAAGTCAACGGCGTCATCTATTAAAAAACGGAGCGAGTATGTAGTTATCCTCATAATC CGATTTAGAAACTGCTGGTAAGCAGTAACTATTTGAATAGGAAAAAAAACAAATATCCTTTTTG AATCACAGAGAAACATCGACTTCTACCAAAGTACACAAAATTGCACACCAAGGTACCATAGCAC TTACATGAACCATACAAATCTAACCATTTGTAAATAAAGCTTTCGTTTTCCTAGTGCAATGATG CATTATTGCTTTATAAGTAACGAGAACTAATAAAAAAACGACTAATAGTACTCCCCCAAACATT AAAAACTCAAAAGACGCCCTCATCAGATCAAGGAGCAAATAGATAAAGCGATGTAACAAAAAAC CTCCCTTCAATCACAAATGTAGGGGGAAATTTTGTCTTGGACATGTACAAAGGAGGTTTTGGAT AGGACTAAATTACCATAATATATTAGCTCTAAGCACAACATTCAATGGAAGCATGCAAGGAGGC TGGAATGTTAGATATGGCCTGCATTTGTGAACAACGCCATTGGAAAAATGCGCCATGCACCCAC ACAATTATGGATGGAGGCATTAGTACACAAAATCATCCCAATTGATGATAGCATACTTGTGTTG ACAGTAGTTGATTCCTTACTGGGGAAAGCAAATAAAGTTTTTGGGCTATTATACTCTTACTCCA GCTAGATAGATTTGTTCACATGCTTAACTGTGCATCAATTTCATGATCTTTAATCTTGTATCAA ACAAACTGTACTTGGTTGCACTCACCTATGCATAAGTCTTTCAATGAAATCTTCTTCCCTCATC CGCAGAAGAGATGATCTAGTTTCTTCACACAGGTCAAACCAGTAACCCACCAGAGCATCACAAG AAAGGCGTGCAGTGTGCAAAGCACATGTGTCTCGTGTTCCATGCCCCCTGCCATAATTAGCTAT TACTGGGCTAATCCACCCTCTTTCTCCTCCACCACATGCATCAGGATAAAGCATTTCCCGTTCA CGCTCCCTCGCCCGTGCATTGTCAAATAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.109800276

Conservation Information
Conserved circRNAs	NA
PMCS	0.109800276

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							413410-410813(+)
413469-410767(+)
413488-410747(-)
						
						Potential amino acid sequence
						
							MPPAIISYYWANPPSFSSTTCIRIKHFPFTLPRPCIVKYLTPESCISNAEPASAVMFPSQTL*(
+)
MHQDKAFPVHAPSPVHCQISHTGKLYQ*(+)
MLYPDACGGGERGWISPVIANYGRGHGTRDTCALHTARLSCDALVGYWFDLCEETRSSLLRMRE
EDFIERLMHRFDSKRFCRDCRRNVIREFKELKELKRLRREHHCTSWFCITDTAFRCEIFDNARA
REREREMLYPDACGGGERGWISPVIANYGRGHGTRDTCALHTARLSCDALVGYWFDLCEETRSS
LLRMREEDFIERLMHRFDSKRFCRDCRRNVIREFKELKELKRLRREHHCTSWFCITDTAFRCEI
FDNARAREREREMLYPDACGGGERGWISPVIANYGRGHGTRDTCALHTARLSCDALVGYWFDLC
EETRSSLLRMREEDFIERLMHRFDSKRFCRDCRRNVIREFKELKELKRLRREHHCTSWFCITDT
AFRCEIFDNARAREREREMLYPDACGGGERGWISPVIANYGRGHGTRDTCALHTARLSCDALVG
YWFDLCEETRSSLLRMREEDFIERLMHRFDSKRFCRDCRRNVIREFKELKELKRLRREHHCTSW
FCITDTAFRCE(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	413410-410813(+) 413469-410767(+) 413488-410747(-)
Potential amino acid sequence	MPPAIISYYWANPPSFSSTTCIRIKHFPFTLPRPCIVKYLTPESCISNAEPASAVMFPSQTL( +) MHQDKAFPVHAPSPVHCQISHTGKLYQ(+) MLYPDACGGGERGWISPVIANYGRGHGTRDTCALHTARLSCDALVGYWFDLCEETRSSLLRMRE EDFIERLMHRFDSKRFCRDCRRNVIREFKELKELKRLRREHHCTSWFCITDTAFRCEIFDNARA REREREMLYPDACGGGERGWISPVIANYGRGHGTRDTCALHTARLSCDALVGYWFDLCEETRSS LLRMREEDFIERLMHRFDSKRFCRDCRRNVIREFKELKELKRLRREHHCTSWFCITDTAFRCEI FDNARAREREREMLYPDACGGGERGWISPVIANYGRGHGTRDTCALHTARLSCDALVGYWFDLC EETRSSLLRMREEDFIERLMHRFDSKRFCRDCRRNVIREFKELKELKRLRREHHCTSWFCITDT AFRCEIFDNARAREREREMLYPDACGGGERGWISPVIANYGRGHGTRDTCALHTARLSCDALVG YWFDLCEETRSSLLRMREEDFIERLMHRFDSKRFCRDCRRNVIREFKELKELKRLRREHHCTSW FCITDTAFRCE(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os10g0105400_circ_g.8

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