Detail information of AT2G04530_circ_g.2


General Information
CircRNA Name AT2G04530_circ_g.2
ID in PlantcircBase ath_circ_012792
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1577835-1578119  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G04530
Parent gene annotation tRNase Z TRZ2, chloroplastic
Parent gene strand +
Alternative splicing AT2G04530_circ_g.3
Support reads 1
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04530.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTATCCCCCGAGATAGCCTTCACTGGAGATACAACTTCAGAGTATATGCTTGACCCTCGTAAT
GCTGATGCGTTGAGGGCAAAAGTTCTTATAACTGAGggttatgtcatctattcggtcaggaaga
agttgcagaagcagtatgctcacctcaaaggaaaacagatagaaaagattaaaaagtctggcgt
cgaggttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTATGTCATCTATTCGGTCAGGAAGAAGTTGCAGAAGCAGTATGCTCACCTCAAAGGAAAAC
AGATAGAAAAGATTAAAAAGTCTGGCGTCGAGGTTTGTTGCTTATAATAAGCCATATTTCTGAT
ATTGAGGTTTGATAAAGTACAATAATATTGAACTTAATTACAGATTACGGACACGATATTATCC
CCCGAGATAGCCTTCACTGGAGATACAACTTCAGAGTATATGCTTGACCCTCGTAATGCTGATG
CGTTGAGGGCAAAAGTTCTTATAACTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.232338772
Functional Information
Coding potential Y
Potential coding position 1578066-1578116(+)
Potential amino acid sequence MLDPRNADALRAKVLITEGYVIYSVRKKLQKQYAHLKGKQIEKIKKSGVEITDTILSPEIAFTG
DTTSEYMLDPRNADALRAKVLITEGYVIYSVRKKLQKQYAHLKGKQIEKIKKSGVEITDTILSP
EIAFTGDTTSEYMLDPRNADALRAKVLITEGYVIYSVRKKLQKQYAHLKGKQIEKIKKSGVEIT
DTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017