Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT2G04530_circ_g.2 |
ID in PlantcircBase | ath_circ_012792 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr2: 1577835-1578119 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT2G04530 |
Parent gene annotation |
tRNase Z TRZ2, chloroplastic |
Parent gene strand | + |
Alternative splicing | AT2G04530_circ_g.3 |
Support reads | 1 |
Tissues | seed |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT2G04530.1:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.232338772 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
1578066-1578116(+) |
Potential amino acid sequence |
MLDPRNADALRAKVLITEGYVIYSVRKKLQKQYAHLKGKQIEKIKKSGVEITDTILSPEIAFTG DTTSEYMLDPRNADALRAKVLITEGYVIYSVRKKLQKQYAHLKGKQIEKIKKSGVEITDTILSP EIAFTGDTTSEYMLDPRNADALRAKVLITEGYVIYSVRKKLQKQYAHLKGKQIEKIKKSGVEIT DTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITE(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |