Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT2G04530_circ_g.3 |
ID in PlantcircBase | ath_circ_012793 |
Alias | At_ciR945, AT2G04530_C1 |
Organism | Arabidpsis thaliana |
Position | chr2: 1577835-1578280 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, find_circ, CIRI2 |
Parent gene | AT2G04530 |
Parent gene annotation |
tRNase Z TRZ2, chloroplastic |
Parent gene strand | + |
Alternative splicing | AT2G04530_circ_g.2 |
Support reads | 6/4 |
Tissues | leaf/inflorescences, whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT2G04530.1:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.206314085 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
1578066-1578277(+) |
Potential amino acid sequence |
MLDPRNADALRAKVLITEATFLDESFSTEHAQALGHTHISQGYVIYSVRKKLQKQYAHLKGKQI EKIKKSGVEITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALG HTHISQGYVIYSVRKKLQKQYAHLKGKQIEKIKKSGVEITDTILSPEIAFTGDTTSEYMLDPRN ADALRAKVLITEATFLDESFSTEHAQALGHTHISQGYVIYSVRKKLQKQYAHLKGKQIEKIKKS GVEITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALGHTHISQ (+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
---|---|
References | Ye et al., 2015;Chu et al., 2017;Zhang et al., 2019 |