Detail information of AT2G04530_circ_g.3


General Information
CircRNA Name AT2G04530_circ_g.3
ID in PlantcircBase ath_circ_012793
Alias At_ciR945, AT2G04530_C1
Organism Arabidpsis thaliana
Position chr2: 1577835-1578280  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, find_circ, CIRI2
Parent gene AT2G04530
Parent gene annotation tRNase Z TRZ2, chloroplastic
Parent gene strand +
Alternative splicing AT2G04530_circ_g.2
Support reads 6/4
Tissues leaf/inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04530.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATAGTTTCTGAGCTTAACCGATCTGGCAGGCAACTTTCTTGGATGAAAGTTTTAGCACTGAG
CATGCGCAAGCACTCGGTCATACTCATATATCTCAGggttatgtcatctattcggtcaggaaga
agttgcagaagcagtatgctcacctcaaaggaaaacagatagaaaagattaaaaagtctggcgt
cgaggttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTATGTCATCTATTCGGTCAGGAAGAAGTTGCAGAAGCAGTATGCTCACCTCAAAGGAAAAC
AGATAGAAAAGATTAAAAAGTCTGGCGTCGAGGTTTGTTGCTTATAATAAGCCATATTTCTGAT
ATTGAGGTTTGATAAAGTACAATAATATTGAACTTAATTACAGATTACGGACACGATATTATCC
CCCGAGATAGCCTTCACTGGAGATACAACTTCAGAGTATATGCTTGACCCTCGTAATGCTGATG
CGTTGAGGGCAAAAGTTCTTATAACTGAGGTACTTACTTGAATCCTATTGGCGGTACTGTTATA
TCATTTTAAAACTTCACTGGATTATGTTATAGTTTCTGAGCTTAACCGATCTGGCAGGCAACTT
TCTTGGATGAAAGTTTTAGCACTGAGCATGCGCAAGCACTCGGTCATACTCATATATCTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.206314085
Functional Information
Coding potential Y
Potential coding position 1578066-1578277(+)
Potential amino acid sequence MLDPRNADALRAKVLITEATFLDESFSTEHAQALGHTHISQGYVIYSVRKKLQKQYAHLKGKQI
EKIKKSGVEITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALG
HTHISQGYVIYSVRKKLQKQYAHLKGKQIEKIKKSGVEITDTILSPEIAFTGDTTSEYMLDPRN
ADALRAKVLITEATFLDESFSTEHAQALGHTHISQGYVIYSVRKKLQKQYAHLKGKQIEKIKKS
GVEITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALGHTHISQ
(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress