Detail information of Os10g0546300_circ_g.3


General Information
CircRNA Name Os10g0546300_circ_g.3
ID in PlantcircBase osa_circ_007896
Alias NA
Organism Oryza sativa
Position chr10: 21351486-21352457  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0546300
Parent gene annotation Protein of unknown function DUF2451, C-terminal domain containin
g protein. (Os10t0546300-01)
Parent gene strand +
Alternative splicing Os10g0546300_circ_g.2 Os10g0546300_circ_g.4 Os10g0546300_circ_g.5 Os10g0546300_circ_g.6 Os10g0546300_circ_g.7 Os10g0546300_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0546300-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGATGTTTGCAGGCGTTTCAATTATTGCCTGAATATTTGCAAATCTTGGAGAACTATTCAGGC
CTTTCTTCTGTACAAGAAATGGGGCGTGGGATTGAGtgaaggggatgcagttagtgatggagtt
agaacaagatttaaaggttgcaaatgtgatctgcatggtattatctcatgaaacttctggatgg
tatttaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGAAGGGGATGCAGTTAGTGATGGAGTTAGAACAAGATTTAAAGGTTGCAAATGTGATCTGCAT
GGTATTATCTCATGAAACTTCTGGATGGTATTTACAAACATTGTTCTGTTCCTTTTATATTTTT
GCATTTACGATTTATTAATCAATATTACAGAATGGACGGAGGCATGTATCCTCTTCAAAGAATG
AGGTATCGAGGGATCTGGTTGTCAATGTAAAATCAAAGAAGAAACAAGCTTTGCTGGTAAATAA
ATTCTCTTGTCTCATTATTGTTTGCGGCATCGACTGGATAATCTTAGTGAATGGTGATTGGCGC
CAGACTTTACATGTCAATCACTGAACTACCATTCTACTGTGAAGCAATATTCTTAATGTGTTTA
TATGTTTCTGGTCCAACCCTTCTTTTTTCAATGTCTTTCAAGGATGGATTATTAATTGTGTTGA
TAAATTCATGTGCATATAATATTTAAGTAATCGCTACCATTAGCTACACGAATTGAAGATTATA
AATAAAAGATTTAGTTTCTGTATCGCAGGATGTTCTTCCAATTCTTACAGAACTTCGTAATGCA
CAAGACATGCAGATGGAACTTGAAAGTTTTGTGGAGAAAGAAAACTATTTTCAGGTGAGCTGAA
TTTTATCCATGACTGCTGTTTTCTCTATCTGTTTCATGAATCCATCTCTTTTACTCTAGGGTGA
TATTAGCTACTGCTTTATTTTACTCCAGTAGTTTTCAACCCCATAAATCACCTGACCTGTTGTA
GTATGTTGGTTGCTCCACAGTCTGAACTACCACAGTAGTTGTTTCTTATGCTGTTAATCACCTA
TGCCTTCTTATATTTATGGTAGTTTTCTTATGCCATGTTGCTGATGTTTGCAGGCGTTTCAATT
ATTGCCTGAATATTTGCAAATCTTGGAGAACTATTCAGGCCTTTCTTCTGTACAAGAAATGGGG
CGTGGGATTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.153747402
Functional Information
Coding potential Y
Potential coding position 21352028-21351675(+)
21352071-21352044(-)
Potential amino acid sequence MFFQFLQNFVMHKTCRWNLKVLWRKKTIFRRFNYCLNICKSWRTIQAFLLYKKWGVGLSEGDAV
SDGVRTRFKGCKCDLHEWTEACILFKE*(+)
MSCALRSSVRIGRTSSKACFFFDFTLTTRSLDTSFFEEDTCLRPFMQITFATFKSCSNSITNCI
PFTQSHAPFLVQKKGLNSSPRFANIQAIIETPENSFLSPQNFQVPSACLVHYEVL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017