Plant Circular RNA Database

Detail information of Os10g0546300_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os10g0546300_circ_g.7
					
						ID in PlantcircBase
						osa_circ_007900
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr10: 21352652-21357665  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os10g0546300						
					
						Parent gene annotation
						
							Protein of unknown function DUF2451, C-terminal domain containin
g protein. (Os10t0546300-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os10g0546300_circ_g.2 Os10g0546300_circ_g.3 Os10g0546300_circ_g.4 Os10g0546300_circ_g.5 Os10g0546300_circ_g.6 Os10g0546300_circ_g.8 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os10t0546300-01:13

General Information
CircRNA Name	Os10g0546300_circ_g.7
ID in PlantcircBase	osa_circ_007900
Alias	NA
Organism	Oryza sativa
Position	chr10: 21352652-21357665 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os10g0546300
Parent gene annotation	Protein of unknown function DUF2451, C-terminal domain containin g protein. (Os10t0546300-01)
Parent gene strand	+
Alternative splicing	Os10g0546300_circ_g.2 Os10g0546300_circ_g.3 Os10g0546300_circ_g.4 Os10g0546300_circ_g.5 Os10g0546300_circ_g.6 Os10g0546300_circ_g.8
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os10t0546300-01:13

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TGATGTTGTTTGCACCTTTTATTACAGCTATGTTGATTTGTTATTGGGTGAATTCAAGCACTAC
AAAACTAGATTGGACCATGGAGGAATTTCCAAGGAGgcatggttggcacgaacaatccaaaaat
tagacacccatttactaggggtttgtcagaccttccatgaggaaagctatctaactgtgagtat
ttccattg

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	TGATGTTGTTTGCACCTTTTATTACAGCTATGTTGATTTGTTATTGGGTGAATTCAAGCACTAC AAAACTAGATTGGACCATGGAGGAATTTCCAAGGAGgcatggttggcacgaacaatccaaaaat tagacacccatttactaggggtttgtcagaccttccatgaggaaagctatctaactgtgagtat ttccattg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.113836164

Conservation Information
Conserved circRNAs	NA
PMCS	0.113836164

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							21352887-21357662(+)
21356702-21352679(+)
						
					

						Potential amino acid sequence
						
							MGDIGGMAEKMQSFFLQEVLSQTHYVLKEMLEEEVGNNTQRNRFTYSDLCAQVPEPKLRPCLLR
TFQSLFSLMCSYYTIMSFCPGVKSIESEGENSLTGRNNTSQSADESLGDSGRGHAAEMSDRTSS
SDVSNPDTSTSGTDSPFYQLRTDAAKLVAHAFERGRRNLWQLATSRLSVLLSSSVVFSTSTYQF
LKNYEDLTIFILAGEAFCGFEASEFRQKLKGICLNYSVAFHRQNIYALKMVLERESWTIMSAEA
SRIISLAGLTGDGAALISPTSRISTLPIHGSTMSDTGKEKNGFAAWTKIENPFFYKVENGTTES
PKSNMMFNSVDNSSAHGSTNNGNGNKAPLDEENEDLLADFIDEDSQLPSRLAKTKIVKGNSSHW
KDGDISSQTGSSLSLLRMMDKYARLMQKLEIVNVELFKGICQLFGIFYHYIYETFGNQDRGQSG
KSLPDHQSFRLRVALSKITQDSDQWIKPQSISYSPSSPVSMDVMPTAPPSSMFTLYGLKERCAA
AETISLVARVLNRSRAHLHSVLSQSNTSILEEFFGTMVDSVPDLAEHIHRTSARMLLHINGYPD
KIANAKWEVKELGMEHNGYVDLLLGEFKHYKTRLDHGGISKEAWLARTIQKLDTHLLGVCQTFH
EESYLTVIDAYALMGDIGGMAEKMQSFFLQEVLSQTHYVLKEMLEEEVGNNTQRNRFTYSDLCA
QVPEPKLRPCLLRTFQSLFSLMCSYYTIMSFCPGVKSIESEGENSLTGRNNTSQSADESLGDSG
RGHAAEMSDRTSSSDVSNPDTSTSGTDSPFYQLRTDAAKLVAHAFERGRRNLWQLATSRLSVLL
SSSVVFSTSTYQFLKNYEDLTIFILAGEAFCGFEASEFRQKLKGICLNYSVAFHRQNIYALKMV
LERESWTIMSAEASRIISLAGLTGDGAALISPTSRISTLPIHGSTMSDTGKEKNGFAAWTKIEN
PFFYKVENGTTESPKSNMMFNSVDNSSAHGSTNNGNGNKAPLDEENEDLLADFIDEDSQLPSRL
AKTKIVKGNSSHWKDGDISSQTGSSLSLLRMMDKYARLMQKLEIVNVELFKGICQLFGIFYHYI
YETFGNQDRGQSGKSLPDHQSFRLRVALSKITQDSDQWIKPQSISYSPSSPVSMDVMPTAPPSS
MFTLYGLKERCAAAETISLVARVLNRSRAHLHSVLSQSNTSILEEFFGTMVDSVPDLAEHIHRT
SARMLLHINGYPDKIANAKWEVKELGMEHNGYVDLLLGEFKHYKTRLDHGGISKEAWLARTIQK
LDTHLLGVCQTFHEESYLTVIDAYALMGDIGGMAEKMQSFFLQEVLSQTHYVLKEMLEEEVGNN
TQRNRFTYSDLCAQVPEPKLRPCLLRTFQSLFSLMCSYYTIMSFCPGVKSIESEGENSLTGRNN
TSQSADESLGDSGRGHAAEMSDRTSSSDVSNPDTSTSGTDSPFYQLRTDAAKLVAHAFERGRRN
LWQLATSRLSVLLSSSVVFSTSTYQFLKNYEDLTIFILAGEAFCGFEASEFRQKLKGICLNYSV
AFHRQNIYALKMVLERESWTIMSAEASRIISLAGLTGDGAALISPTSRISTLPIHGSTMSDTGK
EKNGFAAWTKIENPFFYKVENGTTESPKSNMMFNSVDNSSAHGSTNNGNGNKAPLDEENEDLLA
DFIDEDSQLPSRLAKTKIVKGNSSHWKDGDISSQTGSSLSLLRMMDKYARLMQKLEIVNVELFK
GICQLFGIFYHYIYETFGNQDRGQSGKSLPDHQSFRLRVALSKITQDSDQWIKPQSISYSPSSP
VSMDVMPTAPPSSMFTLYGLKERCAAAETISLVARVLNRSRAHLHSVLSQSNTSILEEFFGTMV
DSVPDLAEHIHRTSARMLLHINGYPDKIANAKWEVKELGMEHNGYVDLLLGEFKHYKTRLDHGG
ISKEAWLARTIQKLDTHLLGVCQTFHEESYLTVIDAYALMGDIGGMAEKMQSFFLQEVLSQTHY
VLKEMLEEEVGNNTQRNRFTYSDLCAQVPEPKLRPCLLRTFQSLFSLMCSYYTIMSFCPGVKSI
ESEGENSLTGRNNTSQSADESLGDSGRGHAAEMSDRTSSSDVSNPDTSTSGTDSPFYQLRTDAA
KLVAHAFERGRRNLWQLATSRLSVLLSSSVVFSTSTYQFLKNYEDLTIFILAGEAFCGFEASEF
RQKLKGICLNYSVAFHRQNIYALKMVLERESWTIMSAEASRIISLAGLTGDGAALISPTSRIST
LPIHGSTMSDTGKEKNGFAAWTKIENPFFYKVENGTTESPKSNMMFNSVDNSSAHGSTNNGNGN
KAPLDEENEDLLADFIDEDSQLPSRLAKTKIVKGNSSHWKDGDISSQTGSSLSLLRMMDKYARL
MQKLEIVNVELFKGICQLFGIFYHYIYETFGNQDRGQSGKSLPDHQSFRLRVALSKITQDSDQW
IKPQSISYSPSSPVSMDVMPTAPPSSMFTLYGLKERCAAAETISLVARVLNRSRAHLHSVLSQS
NTSILEEFFGTMVDSVPDLAEHIHRTSARMLLHINGYPDKIANAKWEVKELGMEHNGYVDLLLG
EFKHYKTRLDHGGISKE(+)
MGIQIRLQMPNGRSRSLAWSIMAMLICYWVNSSTTKLDWTMEEFPRRHGWHEQSKN*(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	21352887-21357662(+) 21356702-21352679(+)
Potential amino acid sequence	MGDIGGMAEKMQSFFLQEVLSQTHYVLKEMLEEEVGNNTQRNRFTYSDLCAQVPEPKLRPCLLR TFQSLFSLMCSYYTIMSFCPGVKSIESEGENSLTGRNNTSQSADESLGDSGRGHAAEMSDRTSS SDVSNPDTSTSGTDSPFYQLRTDAAKLVAHAFERGRRNLWQLATSRLSVLLSSSVVFSTSTYQF LKNYEDLTIFILAGEAFCGFEASEFRQKLKGICLNYSVAFHRQNIYALKMVLERESWTIMSAEA SRIISLAGLTGDGAALISPTSRISTLPIHGSTMSDTGKEKNGFAAWTKIENPFFYKVENGTTES PKSNMMFNSVDNSSAHGSTNNGNGNKAPLDEENEDLLADFIDEDSQLPSRLAKTKIVKGNSSHW KDGDISSQTGSSLSLLRMMDKYARLMQKLEIVNVELFKGICQLFGIFYHYIYETFGNQDRGQSG KSLPDHQSFRLRVALSKITQDSDQWIKPQSISYSPSSPVSMDVMPTAPPSSMFTLYGLKERCAA AETISLVARVLNRSRAHLHSVLSQSNTSILEEFFGTMVDSVPDLAEHIHRTSARMLLHINGYPD KIANAKWEVKELGMEHNGYVDLLLGEFKHYKTRLDHGGISKEAWLARTIQKLDTHLLGVCQTFH EESYLTVIDAYALMGDIGGMAEKMQSFFLQEVLSQTHYVLKEMLEEEVGNNTQRNRFTYSDLCA QVPEPKLRPCLLRTFQSLFSLMCSYYTIMSFCPGVKSIESEGENSLTGRNNTSQSADESLGDSG RGHAAEMSDRTSSSDVSNPDTSTSGTDSPFYQLRTDAAKLVAHAFERGRRNLWQLATSRLSVLL SSSVVFSTSTYQFLKNYEDLTIFILAGEAFCGFEASEFRQKLKGICLNYSVAFHRQNIYALKMV LERESWTIMSAEASRIISLAGLTGDGAALISPTSRISTLPIHGSTMSDTGKEKNGFAAWTKIEN PFFYKVENGTTESPKSNMMFNSVDNSSAHGSTNNGNGNKAPLDEENEDLLADFIDEDSQLPSRL AKTKIVKGNSSHWKDGDISSQTGSSLSLLRMMDKYARLMQKLEIVNVELFKGICQLFGIFYHYI YETFGNQDRGQSGKSLPDHQSFRLRVALSKITQDSDQWIKPQSISYSPSSPVSMDVMPTAPPSS MFTLYGLKERCAAAETISLVARVLNRSRAHLHSVLSQSNTSILEEFFGTMVDSVPDLAEHIHRT SARMLLHINGYPDKIANAKWEVKELGMEHNGYVDLLLGEFKHYKTRLDHGGISKEAWLARTIQK LDTHLLGVCQTFHEESYLTVIDAYALMGDIGGMAEKMQSFFLQEVLSQTHYVLKEMLEEEVGNN TQRNRFTYSDLCAQVPEPKLRPCLLRTFQSLFSLMCSYYTIMSFCPGVKSIESEGENSLTGRNN TSQSADESLGDSGRGHAAEMSDRTSSSDVSNPDTSTSGTDSPFYQLRTDAAKLVAHAFERGRRN LWQLATSRLSVLLSSSVVFSTSTYQFLKNYEDLTIFILAGEAFCGFEASEFRQKLKGICLNYSV AFHRQNIYALKMVLERESWTIMSAEASRIISLAGLTGDGAALISPTSRISTLPIHGSTMSDTGK EKNGFAAWTKIENPFFYKVENGTTESPKSNMMFNSVDNSSAHGSTNNGNGNKAPLDEENEDLLA DFIDEDSQLPSRLAKTKIVKGNSSHWKDGDISSQTGSSLSLLRMMDKYARLMQKLEIVNVELFK GICQLFGIFYHYIYETFGNQDRGQSGKSLPDHQSFRLRVALSKITQDSDQWIKPQSISYSPSSP VSMDVMPTAPPSSMFTLYGLKERCAAAETISLVARVLNRSRAHLHSVLSQSNTSILEEFFGTMV DSVPDLAEHIHRTSARMLLHINGYPDKIANAKWEVKELGMEHNGYVDLLLGEFKHYKTRLDHGG ISKEAWLARTIQKLDTHLLGVCQTFHEESYLTVIDAYALMGDIGGMAEKMQSFFLQEVLSQTHY VLKEMLEEEVGNNTQRNRFTYSDLCAQVPEPKLRPCLLRTFQSLFSLMCSYYTIMSFCPGVKSI ESEGENSLTGRNNTSQSADESLGDSGRGHAAEMSDRTSSSDVSNPDTSTSGTDSPFYQLRTDAA KLVAHAFERGRRNLWQLATSRLSVLLSSSVVFSTSTYQFLKNYEDLTIFILAGEAFCGFEASEF RQKLKGICLNYSVAFHRQNIYALKMVLERESWTIMSAEASRIISLAGLTGDGAALISPTSRIST LPIHGSTMSDTGKEKNGFAAWTKIENPFFYKVENGTTESPKSNMMFNSVDNSSAHGSTNNGNGN KAPLDEENEDLLADFIDEDSQLPSRLAKTKIVKGNSSHWKDGDISSQTGSSLSLLRMMDKYARL MQKLEIVNVELFKGICQLFGIFYHYIYETFGNQDRGQSGKSLPDHQSFRLRVALSKITQDSDQW IKPQSISYSPSSPVSMDVMPTAPPSSMFTLYGLKERCAAAETISLVARVLNRSRAHLHSVLSQS NTSILEEFFGTMVDSVPDLAEHIHRTSARMLLHINGYPDKIANAKWEVKELGMEHNGYVDLLLG EFKHYKTRLDHGGISKE(+) MGIQIRLQMPNGRSRSLAWSIMAMLICYWVNSSTTKLDWTMEEFPRRHGWHEQSKN*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os10g0546300_circ_g.7

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