Detail information of Os01g0685500_circ_g.1


General Information
CircRNA Name Os01g0685500_circ_g.1
ID in PlantcircBase osa_circ_003320
Alias NA
Organism Oryza sativa
Position chr1: 28261931-28265488  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os01g0685500
Parent gene annotation Similar to DNA ligase. (Os01t0685500-01)
Parent gene strand -
Alternative splicing Os01g0685500_circ_g.2 Os01g0685500_circ_g.3 Os01g0685500_circ_g.4 Os01g0685500_circ_g.5 Os01g0685500_circ_ag.1
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0685500-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACATCCATAAAAATGCAAGTCAGAAAAGGATACAACTTACAGTAAGTTGCTGAGCTAACTCAA
AATGTCCTGGCTTCTCCTGGAACAAGTCGTGGATGTctgcacctcggatttcccaaacctgttc
cgcagaaaaccacaactccggaagctcgtctgttttgtagtaaacaggtttcttgggcagtatt
ctgtcgcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCACCTCGGATTTCCCAAACCTGTTCCGCAGAAAACCACAACTCCGGAAGCTCGTCTGTTTT
GTAGTAAACAGGTTTCTTGGGCAGTATTCTGTCGCCAGAATAGAACTCCTTCATCTGTAGCTCA
ACATTACAAAATCACAAGGCATATATACACAGAAGATTAATTTCCAGAATAACACAAAGTCCAG
ATGATAGATATGAACTGTGTTGAGTTTAAAACAATAAACCACAATGGACACATAATTTATCCTT
TCTGTGACATGTTCACTAGAGATCTCAAACAAATACATAAAAGCCGCATTTGCTAGAGACAGTG
GCGGAGGACTCGGTAGGGCGAGGTCTGGCGCTCGCCATACCTTGCGCCATCCGCCAGTACCCCC
TACCCTCCTGCCGGCAGAGCAGAGCGCGGCGTAGCCGCTCGGGAGAACGATGACTCAACGAGAC
GAGCGAGCGACGGCCGACAGGCGAAGGCGTTCTTGCTGCTGGGCCTCTCGCCGTTGAATTGGAG
GCCCATATTGGTTCCCCATCTCACCATCTTGTTGACTATTAAACCCTAGTAAATTCCCCATCTA
ACCATCTCCATTGATTCCCCATCTCGCGCGATTGGCGGCGTCGAGCCGGCGTCCAGCTGATGAG
TGACGACAGGCGACAGCATGGGCGAGCGGGAGGTGGCACATCGACAGGCGGAGCAGTCGAGCAG
CGGAAGTCCACCAGCCACTGGCCGTTGGGCGCACCTGCGGCAGTCGGCAAGGGCGGCTGCAGGC
TGTGGCTGCAGTTGGGCAGCGCGGCGCATCAGGGCCAGAGCCGGCGCGGCAGTCGGCGGGCCAA
CAAGTAGCAGGGCAGGCCAGCAGCAGCAGCAGAGCAACAGGCTGATTCAATCTTTGCTATTTGT
CTTATCCACCTTAAAGATAGTCTATTAATCGATCTTTGCTAGGACTATCTGTTTTGCAGATTAT
TTATGTCTATCCTCCTTTGGCTATCCCTGAAACTTCATTAGTTGAGGTAAATTTTAGTGATGGA
ATGTGACGAGGGGTTGTTGTCATGCTTAATATTGTGTGGTACAATATGGTGCAATTAAGATTTT
TTTCCATTATTGCTAGGTTGACTCTCATGCTAATTCATGAGCCATACCTCATCTTTTTTTCGTC
CTCCGCCTAGAGAGCTCTCAGTGAAGTCAATTTCATTATAGGAATAGCTATACAATCACTCCAC
TGTTAGTCTAATTTCCATTATTAGTTGTATATTAACCTAATATGATAATATCTGAAGAACTTTC
ATTCCACTTGTTTTCTCAAAACTACCTTCATTCTTTAATTTGTCATGTCATTTTATCAAATCAC
TCAGAATATCAAGAAACTGAACAACGATTTGTATAGCTTCCCAAAAATTATATTCAAGCATGTA
AGCAGGTGTGGACATGATGTGCTTAAAGATGTAATTTGTAAAGCTAGTATGCTACTATGCAAAA
GTATTGCATGATTTGATAAACCAAGAATCCAAATCTATACCTCTTTATAGAACTCATCTGAGAA
ACCAGACATAACGCGGCAGACACTTTGGAACTCTTCGTATTCAGGGTTGTAGCACGCCATAAGA
AAAGGGCTATACCTGTAAATGTAGAGAAGAGAAGAGCATTGGGGCAAGAAGTATGGTAAGGGGA
AAAGAGAGGTTATATGCACAGGAACCAAACGTACCATCCAGCTTTCCGACCATTTCCATACCAT
GCACCAATTGGAACCAAGTCCAGGCTATCACCCAAGCCAACATAGTCACGCTTAACCTGCAACA
ACACACATGGAATACATGATGCATAGTTTTATAGTTTCAGATATAATGAAAAACATTCAGATTC
AGGCACTTGTTTAGTATAATACATAGGTTGCACCTTTAACCATGAATCACAGCGCTTGGAAGCA
GAATATCCAGCATCAACATCCAGTATTTTCAGCATAATACCCTCACAAGAAGACTGGCATGCCA
TTTTGAAAAAGGTGTTCATTCTCTCCAAAGTGGTAGAATTATCCACAGAAGCTTCATCTGCTTC
TACCTGTAAAATTGATTCATGTGTACCATGCATGAACATATGATAAAGAAGCAAGCACAGAGAT
AAAGGCCAAAGTTATTTGCGATGTCAACCAAAATGCAGTAGGTTATTATTCTAGAACAAGTATG
CTAAAAAATTTAAGCTGAGCAGAAGCATATAGTATATGTTGAGACATTACCCTGAAAACATAAC
AAAAGCATCACTACAGTGTCCTGCATTGGTACATGCCCCCCAACACCCCAGGCTACCTATGTCA
TTTTGTTTCTAGGCACTCCATTACAAAGCGGAGATGCTGAAGTCCAACATTTCAGGCCATGTGA
CTAGTTGTTTTACTCATAGTAGTGTAAAAGATGGCAACCATGGGTGAATTCTTGATTGGTCCTT
TTTTTTTTTGAGATATTGATTGGTCCTTGAAGTTCCCCCCAAAACTCACATTGGCAACTCAGAA
AGGGCCATCTAGGTCCTCTAGCTTTCTGTGCTAGACCAAAGGACTTATTGGTAATTCACATTGA
CACATTTGAGTCAAATTTGATTTTATGTGTTCTTGTAGCTGATTCATCTTGAGCAAATGTCTAT
TCTACCCTTACATCCTGAAATTGGATTTGCTATTTCGCTCCCCTTGATTTTATTTATCCCAGTC
TCTTTTTTTCAACCATTATGTGCAGCTCTCATTGTGGCAATATCCAGCTTTTGCTTATGATGAG
GGAGGAATCATTATACATAAGCACCTTGATGCGGAACAAGACAACCCAAATGATATGTTTGGCC
CAAATAGACAAATTTGAGGGATCTAGGAGGCCAATTTGAAACGCAAGGGAGGAAATTAGCCTAG
GGGGAAATTCGGGGGACCAAACTGGGCATTTACCTGGCAAAATTCAAACAAAAGAAAATATGAA
AAGGAATGTTCGTATTGCTAAGTGTGTGGTACAACATAGGGATAATATCCGGTGTAATCATTTT
GCCTTGATGAATACAAGTGCTATTCATAACAGTTACCATGAATCTGCTGCTTTACACTAAGAGG
TGCAACGTTTCGAGTATCATACTATCATGAAGGAGCACAGGAATGGTAGTGGTAATGTTAACGA
ATTAGTTGTGAGTAGGTAATGTTAAAACTGGTTAGTTCCGCATCTTGTATTTGCGTTGCTTGAA
AAGGCAAGCGCTTTGATTTTGTGTTGTCCATTCTAGTTGATTGATTGGTTAAAATTATAGCCTG
ATTCTTTAATTCATAAAGCCGGTTACCTTCACATCGAAGTGGAAAAATGCTAAGAAGATGGCAA
CGTAGCTATTAATCTCATGCAATTTCAATTAACAGAAGGAAATGAAATGAAAAGGAAGGATGAT
ATTATGGCAAGATGTAAAAGGCGATATCATTAGGTCAAGTAAGAAGCGAATGTTTAGAACAGTA
AATACATCCATAAAAATGCAAGTCAGAAAAGGATACAACTTACAGTAAGTTGCTGAGCTAACTC
AAAATGTCCTGGCTTCTCCTGGAACAAGTCGTGGATGT
Conservation Information
Conserved circRNAs NA
PMCS 0.113135861
Functional Information
Coding potential Y
Potential coding position 28265455-28263460(+)
28265486-28261995(+)
28263935-28261933(-)
Potential amino acid sequence MSWLLLEQVVDVCTSDFPNLFRRKPQLRKLVCFVVNRFLGQYSVARIELLHLFIELI*(+)
MSAPRISQTCSAENHNSGSSSVL*(+)
MNTFFKMACQSSCEGIMLKILDVDAGYSASKRCDSWLKVKRDYVGLGDSLDLVPIGAWYGNGRK
AGWYSPFLMACYNPEYEEFQSVCRVMSGFSDEFYKEMKEFYSGDRILPKKPVYYKTDELPELWF
SAEQVWEIRGADIHDLFQEKPGHFELAQQLTVEADEASVDNSTTLERMNTFFKMACQSSCEGIM
LKILDVDAGYSASKRCDSWLKVKRDYVGLGDSLDLVPIGAWYGNGRKAGWYSPFLMACYNPEYE
EFQSVCRVMSGFSDEFYKEMKEFYSGDRILPKKPVYYKTDELPELWFSAEQVWEIRGADIHDLF
QEKPGHFELAQQLTVEADEASVDNSTTLERMNTFFKMACQSSCEGIMLKILDVDAGYSASKRCD
SWLKVKRDYVGLGDSLDLVPIGAWYGNGRKAGWYSPFLMACYNPEYEEFQSVCRVMSGFSDEFY
KEMKEFYSGDRILPKKPVYYKTDELPELWFSAEQVWEIRGADIHDLFQEKPGHFELAQQLTVEA
DEASVDNSTTLERMNTFFKMACQSSCEGIMLKILDVDAGYSASKRCDSWLKVKRDYVGLGDSLD
LVPIGAWYGNGRKAGWYSPFLMACYNPEYEEFQSVCRVMSGFSDEFYKEMKEFYSGDRILPKKP
VYYKTDELPELWFSAEQVWEIRGA(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017