Detail information of BGIOSGA016673_circ_igg.2


General Information
CircRNA Name BGIOSGA016673_circ_igg.2
ID in PlantcircBase osi_circ_014500
Alias Chr03:27775331_27775640(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23145442-23145751  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016673_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TG-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAACCATCGAAGCCCCTTTTGAGTTCTCATGGCCTGAGCCACCACCGGCAATGGAGATCGCGCT
AGCACCAGCTGTTGCTGTTGTATAGCTTCCTGATGGatggcactgaagagaacatactggtttc
aaagggcaaggaatcatgcaaggagtatatcaagagtttcttggcagccatcccaatccgggaa
ctacaggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGGCACTGAAGAGAACATACTGGTTTCAAAGGGCAAGGAATCATGCAAGGAGTATATCAAGAG
TTTCTTGGCAGCCATCCCAATCCGGGAACTACAGGTTGACATCAAGAAAGGCCTGATGGCGTCG
ACGCCATTGCACCGCCGGCTTCAAATAGAGTTCCACTACACTGCATCATCCCCAAAGGAGATTA
CCTCAGCCCCTCAAATTCTAACCATCGAAGCCCCTTTTGAGTTCTCATGGCCTGAGCCACCACC
GGCAATGGAGATCGCGCTAGCACCAGCTGTTGCTGTTGTATAGCTTCCTGATGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021