Detail information of BGIOSGA016673_circ_igg.1


General Information
CircRNA Name BGIOSGA016673_circ_igg.1
ID in PlantcircBase osi_circ_014499
Alias Chr03:27935282_27935494(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23145353-23145566  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016673_circ_igg.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TC-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAAAGGGCAAGGAATCATGCAAGGAGTATATCAAGAGTTTCTTGGCAGCCATCCCAATCCGG
GAACTACAGGTTGACATCAAGAAAGGCCTGATGGCGctacctgagaaagcaccatctagtccta
actcaagtggaccgctgaaggattcttcaaggagctcctcggttgagcaggacagtgcaagatg
gcactgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTACCTGAGAAAGCACCATCTAGTCCTAACTCAAGTGGACCGCTGAAGGATTCTTCAAGGAGCT
CCTCGGTTGAGCAGGACAGTGCAAGATGGCACTGAAGAGAACATACTGGTTTCAAAGGGCAAGG
AATCATGCAAGGAGTATATCAAGAGTTTCTTGGCAGCCATCCCAATCCGGGAACTACAGGTTGA
CATCAAGAAAGGCCTGATGGCG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021