Detail information of AT2G05840_circ_g.5


General Information
CircRNA Name AT2G05840_circ_g.5
ID in PlantcircBase ath_circ_012933
Alias 2:2235408-2235752
Organism Arabidpsis thaliana
Position chr2: 2235408-2235752  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G05840
Parent gene annotation Proteasome subunit alpha type-6-B
Parent gene strand +
Alternative splicing AT2G05840_circ_g.1 AT2G05840_circ_g.2 AT2G05840_circ_g.3 AT2G05840_circ_g.4
Support reads 2
Tissues seedling
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G05840.2:2
AT2G05840.3:1
AT2G05840.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGACCATTATATCTGACTTTGAGTTATCAACTTTTGTAGACTGCTATATCCGCTCTCCAATCT
GTTCTTCAAGAAGACTTCAAAGCAACTGAAATTGAGgcaactagtgctggtatgaaagaacaag
aagcagtcaatttcttggagaagaaaatgaaagaaaaccctgccttcacatatgatgaaacagt
acaggtaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAACTAGTGCTGGTATGAAAGAACAAGAAGCAGTCAATTTCTTGGAGAAGAAAATGAAAGAAA
ACCCTGCCTTCACATATGATGAAACAGTACAGGTAATTATGGACAATCCTTCTTTATTTTAGAT
CGGAAGCAGGTTGATCATTTGCAATGTTCATTTGCTTGCACTTTAAAAGCTTTATTGTTTTATA
TTAGGTTTAGAAACTGTAGGAACGCACAAAACACCAAAATTCTGTGACAGACCTAGACCATTAT
ATCTGACTTTGAGTTATCAACTTTTGTAGACTGCTATATCCGCTCTCCAATCTGTTCTTCAAGA
AGACTTCAAAGCAACTGAAATTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.153623309
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020