Detail information of AT2G05840_circ_g.3


General Information
CircRNA Name AT2G05840_circ_g.3
ID in PlantcircBase ath_circ_012931
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2234878-2235752  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene AT2G05840
Parent gene annotation Proteasome subunit alpha type-6-B
Parent gene strand +
Alternative splicing AT2G05840_circ_g.1 AT2G05840_circ_g.2 AT2G05840_circ_g.4 AT2G05840_circ_g.5
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G05840.2:4
AT2G05840.1:4
AT2G05840.3:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGACCATTATATCTGACTTTGAGTTATCAACTTTTGTAGACTGCTATATCCGCTCTCCAATCT
GTTCTTCAAGAAGACTTCAAAGCAACTGAAATTGAGgattgcagataagtctcaggtttacaca
caacatgcttacatgagaccccttggagtaggcaagtttccctaatccctatttatacatttta
cttgtgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTGCAGATAAGTCTCAGGTTTACACACAACATGCTTACATGAGACCCCTTGGAGTAGGCAAG
TTTCCCTAATCCCTATTTATACATTTTACTTGTGTGGTGGTTTTATCCTGATTCTTGTTTTCTT
TGTCTTTGTGAAGTTGCCATGGTTCTAGGTATTGATGAAGAGAGAGGACCTCTACTTTACAAGT
GTGACCCAGCTGGACATTTTTACGGTCACAAGGTAATACCACCTACTTGTTATGATTAGATAAG
CCTCTGCCTCTTACATGCATATTCGTATAGACTACTGCCTTTGCTAACATGGAAGAAAGAAACA
TTATATTGCACTTGCCTAACCAGATACTGTACTGAGAAACTTATCTGCTTTTAAGAGTTACTGG
TTGACCATGGAGGTGAAACCAAAAGTTCTACACACTGTAAACCTGTGAAATATGATGTAGTCAC
ATACGTGGTACATATGTTCCATAGGATCAGAGGCTTCTATATAAAGTTTCTCCACTTATAAGTT
AGCAAACATATGATGCAGGCAACTAGTGCTGGTATGAAAGAACAAGAAGCAGTCAATTTCTTGG
AGAAGAAAATGAAAGAAAACCCTGCCTTCACATATGATGAAACAGTACAGGTAATTATGGACAA
TCCTTCTTTATTTTAGATCGGAAGCAGGTTGATCATTTGCAATGTTCATTTGCTTGCACTTTAA
AAGCTTTATTGTTTTATATTAGGTTTAGAAACTGTAGGAACGCACAAAACACCAAAATTCTGTG
ACAGACCTAGACCATTATATCTGACTTTGAGTTATCAACTTTTGTAGACTGCTATATCCGCTCT
CCAATCTGTTCTTCAAGAAGACTTCAAAGCAACTGAAATTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.133254943
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017