Detail information of Os03g0184500_circ_g.2


General Information
CircRNA Name Os03g0184500_circ_g.2
ID in PlantcircBase osa_circ_018270
Alias Os_ciR9058
Organism Oryza sativa
Position chr3: 4438142-4439493  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0184500
Parent gene annotation Transcriptional factor B3 family protein. (Os03t0184500-01)
Parent gene strand -
Alternative splicing Os03g0184500_circ_g.1 Os03g0184500_circ_g.3 Os03g0184500_circ_g.4
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0184500-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGCATACTTGACCTCAGGGAGATTAGCGAGGCGCCGAGACCTCCTCGGAGGCGAGGGAGCCAC
GACCGCCGCCTCGATGATCCTACGCCTCTTCTGCTTctcatttccatcatcaacagtagctcgg
ataatatgcacctggacaaaaatcaattttcaaggattattcacattattcatatataaaacat
gcttaagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCATTTCCATCATCAACAGTAGCTCGGATAATATGCACCTGGACAAAAATCAATTTTCAAGGA
TTATTCACATTATTCATATATAAAACATGCTTAAGTTACAGGTACAAATTTATTCAGACATATT
GTTCAGTTCAGTAAAAATTAATACCTTGAAGGTTGTAGGCTTGACCAACTGAAATACTGTCGCA
TCTCCATCCAACAATCCATGGTCCAAAGCAAAGCCAGCCCAGCCACCACTTAGGCCATTCTTGT
AGGCAAGGTAATTGGTATCAAATTGCTCGTCTTTCTCATCCAACAAAGTGACAATGGCATCATG
TTTTGGCAGGTAAGTCTCGCAGAAATGCCTCGGTAAGCCCTTTTGATCATGCCACCAAACAAGT
ATTAGTACCACATGACAACAGTTCCCCTTAAAGAAGGGTTGCAGGGATGGGAATGTGATAGTGC
AGTACTCACCAACCAAAATCCTCGGACCACATGTGAATGTAGCATTGGCTTCACGAAGGAGGGA
AATTCAGGGTCAAGTTGTGATTCCAGTTCCTCTGCTTTTCTTGCTGCCTCGAGCCTAGCTTCCA
TGGAAATTGATCCACGGGTTGCCAGGTAGATACTGTCAATTGCTTTTCGTGGAGACCTGCAGAA
GAAATCGGACAACGGGATGTAGTTTTGCACCTTTTGCTACTTAGTGGGAGGCAATACAGGCTTC
ATACGCTCATGTGGTAATGTTATTGTTATCACATAATGACATACCTTTTCATCCTCTCTGCGCC
ATCTGGTGCTACCTGCCGACAAATGCTACTTCTTAGTACAGAAAAGATGTTTCTTATGATGGTT
ACATACTTACATATGTGGATGCTAGGAACAATGGCACAATTTAAAATGCCATTTACTGAAAATT
GTTAAGTTCTGCTAAGAATGGTTTGTTTCAGAGACTTATTTAATGCTCAGTAGTTCCTACCAAA
TTTGCACATTTTTTTATCAATTCAGTTGGTCAGAAAACGTGAAATACAGCTTCTTCACTGTGCA
ATAGGCCGTTTTTACAGCTTGCACTAGCTGGATTGACAGCCACGGCTAGAACGTATGAAAATCA
CGCTCAATAATTTGTAACCTTAAACTTAGAACCAGATGCATCAGAACAAGAAGCAGGTGTATCT
GAACTTCTTTTTTTTTTCTATGACTGAATATTACTGAATCTTTTTTTCTCCTTGACATTTATTA
CTGTGTAAATGGAACACCAAAGCAAAGCAGTTACCTCTGCATACTTGACCTCAGGGAGATTAGC
GAGGCGCCGAGACCTCCTCGGAGGCGAGGGAGCCACGACCGCCGCCTCGATGATCCTACGCCTC
TTCTGCTT
Conservation Information
Conserved circRNAs NA
PMCS 0.253671684
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015