Detail information of Os03g0184500_circ_g.4


General Information
CircRNA Name Os03g0184500_circ_g.4
ID in PlantcircBase osa_circ_018272
Alias NA
Organism Oryza sativa
Position chr3: 4439392-4439493  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0184500
Parent gene annotation Transcriptional factor B3 family protein. (Os03t0184500-01)
Parent gene strand -
Alternative splicing Os03g0184500_circ_g.1 Os03g0184500_circ_g.2 Os03g0184500_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0184500-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGCGAGGGAGCCACGACCGCCGCCTCGATGATCCTACGCCTCTTCTGCTTctctgcatacttg
acctcagggagattagcgaggcgccgagacctcctcgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGCATACTTGACCTCAGGGAGATTAGCGAGGCGCCGAGACCTCCTCGGAGGCGAGGGAGCC
ACGACCGCCGCCTCGATGATCCTACGCCTCTTCTGCTT
Conservation Information
Conserved circRNAs NA
PMCS 0.099673203
Functional Information
Coding potential Y
Potential coding position 4439472-4439490(+)
4439401-4439394(-)
Potential amino acid sequence MILRLFCFSAYLTSGRLARRRDLLGGEGATTAASMILRLFCFSAYLTSGRLARRRDLLGGEGAT
TAASMILRLFCFSAYLTSGRLARRRDLLGGEGATTAASMILRLFC(+)
MQRSRRGVGSSRRRSWLPRLRGGLGASLISLRSSMQRSRRGVGSSRRRSWLPRLRGGLGASLIS
LRSSMQRSRRGVGSSRRRSWLPRLRGGLGASLISLRSSMQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017