Plant Circular RNA Database

Detail information of Os08g0307400_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os08g0307400_circ_g.7
					
						ID in PlantcircBase
						osa_circ_036655
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 12858088-12864756  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os08g0307400						
					
						Parent gene annotation
						
							Similar to Phosphatidylinositol 3-kinase 1. (Os08t0307400-01);Si
milar to Phosphatidylinositol 3-kinase, root isoform (EC 2.7.1.1
37) (PI3- kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5). (Os08t0307
400-02);Similar to Phosphatidylinositol 3-kinase 1. (Os08t030740
0-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0307400_circ_g.1 Os08g0307400_circ_g.2 Os08g0307400_circ_g.3 Os08g0307400_circ_g.4 Os08g0307400_circ_g.5 Os08g0307400_circ_g.6 Os08g0307400_circ_g.8 Os08g0307400_circ_g.9 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0307400-03:9
Os08t0307400-02:9
Os08t0307400-01:9

General Information
CircRNA Name	Os08g0307400_circ_g.7
ID in PlantcircBase	osa_circ_036655
Alias	NA
Organism	Oryza sativa
Position	chr8: 12858088-12864756 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os08g0307400
Parent gene annotation	Similar to Phosphatidylinositol 3-kinase 1. (Os08t0307400-01);Si milar to Phosphatidylinositol 3-kinase, root isoform (EC 2.7.1.1 37) (PI3- kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5). (Os08t0307 400-02);Similar to Phosphatidylinositol 3-kinase 1. (Os08t030740 0-03)
Parent gene strand	-
Alternative splicing	Os08g0307400_circ_g.1 Os08g0307400_circ_g.2 Os08g0307400_circ_g.3 Os08g0307400_circ_g.4 Os08g0307400_circ_g.5 Os08g0307400_circ_g.6 Os08g0307400_circ_g.8 Os08g0307400_circ_g.9
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0307400-03:9 Os08t0307400-02:9 Os08t0307400-01:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGATTCGCCCAATCTCAGGATCACATGCAATAACAAGTTTATTCTTAGATATATCCACTAAGGA
TGAAGGGACTGATGTATGCAACTTTGCTCCATATTCctgtctccaatccccagtatgtatgtaa
tgacactgtagccagcacaactttttataaaagtttccaaacattgggcagttataccaaaagg
gccatctt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1339
Transcript exons: 12858088-12858242,12860561-12860698,12860787-12860957,12
861120-12861301,12861411-12861532,12862859-12862994,1286
3350-12863445,12864088-12864235,12864566-12864756
CTGTCTCCAATCCCCAGTATGTATGTAATGACACTGTAGCCAGCACAACTTTTTATAAAAGTTT
CCAAACATTGGGCAGTTATACCAAAAGGGCCATCTTCATCCGGATTACACTTTTGTAGGTAACT
TTCTATACTGCCCGTTTTTTGTATAATCTTTGCAACAGAAATTGAAGGAATAAACTCAACCAAC
CCTTCTTCTAGACCAGTCGCAAGAACTTGATAAGGAGTAAGGTGTAAGTCTAGATTATCTGACT
TGAGCAACCGATCCATCAAAGAGATTATTTGAATAACCAACTGATCCTTGCGGAGATTATCTCC
CTTCTTGAAAATCATTTTCGATGTACCCCCATTCACAGTACTAAATGCTATACACAATGGATAA
TTAGCACTTTTGAATACCAATGACTCTTCAGGCACAATTCCGTCAAGGAGGACAGTCGGTGTTA
ATGGAGATGGAATTGGCTCACTGAAGTTTTTAAGCTCACTGAAAATTCCGGAGAATAACTGTTC
TAATATCCTGCCTTTAGTTTGTGCGTCATGTTTGACATTTGATAGTTCCTTCATTATAGAACGT
AACTGAGCAGTGAGTTCTGCCTGCTCTATCAAACTCTGCCACACTTGAAATCCATTTTCCTCCT
TATGTATCTCATTATAGCATCTTCAAGCATCTCATATGTACATAGATACCTTCTTGCATGAGAA
GGATCATGAAGCTCAACAACTAAATACCAGCGAAGAAAGCTAGCAAGTTCGTAATTTGACAAAG
CCCGATTCACAAGGAAGTGTGCTAGACGAGATCTGTCAGATCTTTCAAACCGCAGGCCTTGTAC
AAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGCTGGCCCTTTCAAACACGCCGACAGCATAA
GCACGAACTTCCTCATTTTGAAAAACTGGTGAAAGAAGCCCCAATGCATCAGCCACATCAATAG
ATTCCCACCTTGGAATCAACGCAACAGCTTGTTTGGCTTCCTGGATGTCACTCCATTCCACAGA
GAGGAGGAACTTTACAAGAGCTTTCTTCTCAGATGTCAAATAGAAACGAAATTTCCACAACAAT
TGCTTTTCATCCACATTTAAAGTGCGTGTGGGTGGATACTTGAGGATGTTTTGTATTAACTTTT
GGTCAACTGAGCTTGGCTTCATCTCTCTATCATTTACTCCACGAGCCAAGCTCCAAGCAAGCAC
AGAGTGTTTATGCTCAGATGGATTGATTCGCCCAATCTCAGGATCACATGCAATAACAAGTTTA
TTCTTAGATATATCCACTAAGGATGAAGGGACTGATGTATGCAACTTTGCTCCATATTC
Transcript length: 1343
Transcript exons: 12858088-12858242,12860561-12860698,12860787-12860957,12
861120-12861305,12861411-12861532,12862859-12862994,1286
3350-12863445,12864088-12864235,12864566-12864756
CTGTCTCCAATCCCCAGTATGTATGTAATGACACTGTAGCCAGCACAACTTTTTATAAAAGTTT
CCAAACATTGGGCAGTTATACCAAAAGGGCCATCTTCATCCGGATTACACTTTTGTAGGTAACT
TTCTATACTGCCCGTTTTTTGTATAATCTTTGCAACAGAAATTGAAGGAATAAACTCAACCAAC
CCTTCTTCTAGACCAGTCGCAAGAACTTGATAAGGAGTAAGGTGTAAGTCTAGATTATCTGACT
TGAGCAACCGATCCATCAAAGAGATTATTTGAATAACCAACTGATCCTTGCGGAGATTATCTCC
CTTCTTGAAAATCATTTTCGATGTACCCCCATTCACAGTACTAAATGCTATACACAATGGATAA
TTAGCACTTTTGAATACCAATGACTCTTCAGGCACAATTCCGTCAAGGAGGACAGTCGGTGTTA
ATGGAGATGGAATTGGCTCACTGAAGTTTTTAAGCTCACTGAAAATTCCGGAGAATAACTGTTC
TAATATCCTGCCTTTAGTTTGTGCGTCATGTTTGACATTTGATAGTTCCTTCATTATAGAACGT
AACTGAGCAGTGAGTTCTGCCTGCTCTATCAAACTCTGCCACACTTGAAATCCATTTTCCTCCT
TATGTACTGATCTCATTATAGCATCTTCAAGCATCTCATATGTACATAGATACCTTCTTGCATG
AGAAGGATCATGAAGCTCAACAACTAAATACCAGCGAAGAAAGCTAGCAAGTTCGTAATTTGAC
AAAGCCCGATTCACAAGGAAGTGTGCTAGACGAGATCTGTCAGATCTTTCAAACCGCAGGCCTT
GTACAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGCTGGCCCTTTCAAACACGCCGACAGC
ATAAGCACGAACTTCCTCATTTTGAAAAACTGGTGAAAGAAGCCCCAATGCATCAGCCACATCA
ATAGATTCCCACCTTGGAATCAACGCAACAGCTTGTTTGGCTTCCTGGATGTCACTCCATTCCA
CAGAGAGGAGGAACTTTACAAGAGCTTTCTTCTCAGATGTCAAATAGAAACGAAATTTCCACAA
CAATTGCTTTTCATCCACATTTAAAGTGCGTGTGGGTGGATACTTGAGGATGTTTTGTATTAAC
TTTTGGTCAACTGAGCTTGGCTTCATCTCTCTATCATTTACTCCACGAGCCAAGCTCCAAGCAA
GCACAGAGTGTTTATGCTCAGATGGATTGATTCGCCCAATCTCAGGATCACATGCAATAACAAG
TTTATTCTTAGATATATCCACTAAGGATGAAGGGACTGATGTATGCAACTTTGCTCCATATTC
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	TGATTCGCCCAATCTCAGGATCACATGCAATAACAAGTTTATTCTTAGATATATCCACTAAGGA TGAAGGGACTGATGTATGCAACTTTGCTCCATATTCctgtctccaatccccagtatgtatgtaa tgacactgtagccagcacaactttttataaaagtttccaaacattgggcagttataccaaaagg gccatctt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1339 Transcript exons: 12858088-12858242,12860561-12860698,12860787-12860957,12 861120-12861301,12861411-12861532,12862859-12862994,1286 3350-12863445,12864088-12864235,12864566-12864756 CTGTCTCCAATCCCCAGTATGTATGTAATGACACTGTAGCCAGCACAACTTTTTATAAAAGTTT CCAAACATTGGGCAGTTATACCAAAAGGGCCATCTTCATCCGGATTACACTTTTGTAGGTAACT TTCTATACTGCCCGTTTTTTGTATAATCTTTGCAACAGAAATTGAAGGAATAAACTCAACCAAC CCTTCTTCTAGACCAGTCGCAAGAACTTGATAAGGAGTAAGGTGTAAGTCTAGATTATCTGACT TGAGCAACCGATCCATCAAAGAGATTATTTGAATAACCAACTGATCCTTGCGGAGATTATCTCC CTTCTTGAAAATCATTTTCGATGTACCCCCATTCACAGTACTAAATGCTATACACAATGGATAA TTAGCACTTTTGAATACCAATGACTCTTCAGGCACAATTCCGTCAAGGAGGACAGTCGGTGTTA ATGGAGATGGAATTGGCTCACTGAAGTTTTTAAGCTCACTGAAAATTCCGGAGAATAACTGTTC TAATATCCTGCCTTTAGTTTGTGCGTCATGTTTGACATTTGATAGTTCCTTCATTATAGAACGT AACTGAGCAGTGAGTTCTGCCTGCTCTATCAAACTCTGCCACACTTGAAATCCATTTTCCTCCT TATGTATCTCATTATAGCATCTTCAAGCATCTCATATGTACATAGATACCTTCTTGCATGAGAA GGATCATGAAGCTCAACAACTAAATACCAGCGAAGAAAGCTAGCAAGTTCGTAATTTGACAAAG CCCGATTCACAAGGAAGTGTGCTAGACGAGATCTGTCAGATCTTTCAAACCGCAGGCCTTGTAC AAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGCTGGCCCTTTCAAACACGCCGACAGCATAA GCACGAACTTCCTCATTTTGAAAAACTGGTGAAAGAAGCCCCAATGCATCAGCCACATCAATAG ATTCCCACCTTGGAATCAACGCAACAGCTTGTTTGGCTTCCTGGATGTCACTCCATTCCACAGA GAGGAGGAACTTTACAAGAGCTTTCTTCTCAGATGTCAAATAGAAACGAAATTTCCACAACAAT TGCTTTTCATCCACATTTAAAGTGCGTGTGGGTGGATACTTGAGGATGTTTTGTATTAACTTTT GGTCAACTGAGCTTGGCTTCATCTCTCTATCATTTACTCCACGAGCCAAGCTCCAAGCAAGCAC AGAGTGTTTATGCTCAGATGGATTGATTCGCCCAATCTCAGGATCACATGCAATAACAAGTTTA TTCTTAGATATATCCACTAAGGATGAAGGGACTGATGTATGCAACTTTGCTCCATATTC Transcript length: 1343 Transcript exons: 12858088-12858242,12860561-12860698,12860787-12860957,12 861120-12861305,12861411-12861532,12862859-12862994,1286 3350-12863445,12864088-12864235,12864566-12864756 CTGTCTCCAATCCCCAGTATGTATGTAATGACACTGTAGCCAGCACAACTTTTTATAAAAGTTT CCAAACATTGGGCAGTTATACCAAAAGGGCCATCTTCATCCGGATTACACTTTTGTAGGTAACT TTCTATACTGCCCGTTTTTTGTATAATCTTTGCAACAGAAATTGAAGGAATAAACTCAACCAAC CCTTCTTCTAGACCAGTCGCAAGAACTTGATAAGGAGTAAGGTGTAAGTCTAGATTATCTGACT TGAGCAACCGATCCATCAAAGAGATTATTTGAATAACCAACTGATCCTTGCGGAGATTATCTCC CTTCTTGAAAATCATTTTCGATGTACCCCCATTCACAGTACTAAATGCTATACACAATGGATAA TTAGCACTTTTGAATACCAATGACTCTTCAGGCACAATTCCGTCAAGGAGGACAGTCGGTGTTA ATGGAGATGGAATTGGCTCACTGAAGTTTTTAAGCTCACTGAAAATTCCGGAGAATAACTGTTC TAATATCCTGCCTTTAGTTTGTGCGTCATGTTTGACATTTGATAGTTCCTTCATTATAGAACGT AACTGAGCAGTGAGTTCTGCCTGCTCTATCAAACTCTGCCACACTTGAAATCCATTTTCCTCCT TATGTACTGATCTCATTATAGCATCTTCAAGCATCTCATATGTACATAGATACCTTCTTGCATG AGAAGGATCATGAAGCTCAACAACTAAATACCAGCGAAGAAAGCTAGCAAGTTCGTAATTTGAC AAAGCCCGATTCACAAGGAAGTGTGCTAGACGAGATCTGTCAGATCTTTCAAACCGCAGGCCTT GTACAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGCTGGCCCTTTCAAACACGCCGACAGC ATAAGCACGAACTTCCTCATTTTGAAAAACTGGTGAAAGAAGCCCCAATGCATCAGCCACATCA ATAGATTCCCACCTTGGAATCAACGCAACAGCTTGTTTGGCTTCCTGGATGTCACTCCATTCCA CAGAGAGGAGGAACTTTACAAGAGCTTTCTTCTCAGATGTCAAATAGAAACGAAATTTCCACAA CAATTGCTTTTCATCCACATTTAAAGTGCGTGTGGGTGGATACTTGAGGATGTTTTGTATTAAC TTTTGGTCAACTGAGCTTGGCTTCATCTCTCTATCATTTACTCCACGAGCCAAGCTCCAAGCAA GCACAGAGTGTTTATGCTCAGATGGATTGATTCGCCCAATCTCAGGATCACATGCAATAACAAG TTTATTCTTAGATATATCCACTAAGGATGAAGGGACTGATGTATGCAACTTTGCTCCATATTC
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.310584783

Conservation Information
Conserved circRNAs	NA
PMCS	0.310584783

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							12864222-12858112(+)
12864721-12858206(+)
12864593-12864716(-)
12858161-12864716(-)
						
						Potential amino acid sequence
						
							MFCINFWSTELGFISLSFTPRAKLQASTECLCSDGLIRPISGSHAITSLFLDISTKDEGTDVCN
FAPYSCLQSPVCM*(+)
MKGLMYATLLHIPVSNPQYVCNDTVASTTFYKSFQTLGSYTKRAIFIRITLL*(+)
MKPSSVDQKLIQNILKYPPTRTLNVDEKQLLWKFRFYLTSEKKALVKFLLSVEWSDIQEAKQAV
ALIPRWESIDVADALGLLSPVFQNEEVRAYAVGVFERASDEELQCYLLQLVQGLRFERSDRSRL
AHFLVNRALSNYELASFLRWYLVVELHDPSHARRYLCTYEMLEDAIMRSVHKEENGFQVWQSLI
EQAELTAQLRSIMKELSNVKHDAQTKGRILEQLFSGIFSELKNFSEPIPSPLTPTVLLDGIVPE
ESLVFKSANYPLCIAFSTVNGGTSKMIFKKGDNLRKDQLVIQIISLMDRLLKSDNLDLHLTPYQ
VLATGLEEGLVEFIPSISVAKIIQKTGSIESYLQKCNPDEDGPFGITAQCLETFIKSCAGYSVI
TYILGIGDRNMEQSCIHQSLHP*(-)
MFGNFYKKLCWLQCHYIHTGDWRQEYGAKLHTSVPSSLVDISKNKLVIACDPEIGRINPSEHKH
SVLAWSLARGVNDREMKPSSVDQKLIQNILKYPPTRTLNVDEKQLLWKFRFYLTSEKKALVKFL
LSVEWSDIQEAKQAVALIPRWESIDVADALGLLSPVFQNEEVRAYAVGVFERASDEELQCYLLQ
LVQGLRFERSDRSRLAHFLVNRALSNYELASFLRWYLVVELHDPSHARRYLCTYEMLEDAIMRS
VHKEENGFQVWQSLIEQAELTAQLRSIMKELSNVKHDAQTKGRILEQLFSGIFSELKNFSEPIP
SPLTPTVLLDGIVPEESLVFKSANYPLCIAFSTVNGGTSKMIFKKGDNLRKDQLVIQIISLMDR
LLKSDNLDLHLTPYQVLATGLEEGLVEFIPSISVAKIIQKTGSIESYLQKCNPDEDGPFGITAQ
CLETFIKSCAGYSVITYILGIGDRNMEQSCIHQSLHP*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	12864222-12858112(+) 12864721-12858206(+) 12864593-12864716(-) 12858161-12864716(-)
Potential amino acid sequence	MFCINFWSTELGFISLSFTPRAKLQASTECLCSDGLIRPISGSHAITSLFLDISTKDEGTDVCN FAPYSCLQSPVCM(+) MKGLMYATLLHIPVSNPQYVCNDTVASTTFYKSFQTLGSYTKRAIFIRITLL(+) MKPSSVDQKLIQNILKYPPTRTLNVDEKQLLWKFRFYLTSEKKALVKFLLSVEWSDIQEAKQAV ALIPRWESIDVADALGLLSPVFQNEEVRAYAVGVFERASDEELQCYLLQLVQGLRFERSDRSRL AHFLVNRALSNYELASFLRWYLVVELHDPSHARRYLCTYEMLEDAIMRSVHKEENGFQVWQSLI EQAELTAQLRSIMKELSNVKHDAQTKGRILEQLFSGIFSELKNFSEPIPSPLTPTVLLDGIVPE ESLVFKSANYPLCIAFSTVNGGTSKMIFKKGDNLRKDQLVIQIISLMDRLLKSDNLDLHLTPYQ VLATGLEEGLVEFIPSISVAKIIQKTGSIESYLQKCNPDEDGPFGITAQCLETFIKSCAGYSVI TYILGIGDRNMEQSCIHQSLHP(-) MFGNFYKKLCWLQCHYIHTGDWRQEYGAKLHTSVPSSLVDISKNKLVIACDPEIGRINPSEHKH SVLAWSLARGVNDREMKPSSVDQKLIQNILKYPPTRTLNVDEKQLLWKFRFYLTSEKKALVKFL LSVEWSDIQEAKQAVALIPRWESIDVADALGLLSPVFQNEEVRAYAVGVFERASDEELQCYLLQ LVQGLRFERSDRSRLAHFLVNRALSNYELASFLRWYLVVELHDPSHARRYLCTYEMLEDAIMRS VHKEENGFQVWQSLIEQAELTAQLRSIMKELSNVKHDAQTKGRILEQLFSGIFSELKNFSEPIP SPLTPTVLLDGIVPEESLVFKSANYPLCIAFSTVNGGTSKMIFKKGDNLRKDQLVIQIISLMDR LLKSDNLDLHLTPYQVLATGLEEGLVEFIPSISVAKIIQKTGSIESYLQKCNPDEDGPFGITAQ CLETFIKSCAGYSVITYILGIGDRNMEQSCIHQSLHP(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os08g0307400_circ_g.7

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