Detail information of AT2G35650_circ_g.3


General Information
CircRNA Name AT2G35650_circ_g.3
ID in PlantcircBase ath_circ_016669
Alias Ath_circ_FC1509, Ath_circ_FC1510
Organism Arabidpsis thaliana
Position chr2: 14986064-14987365  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene AT2G35650
Parent gene annotation Probable mannan synthase 7
Parent gene strand +
Alternative splicing AT2G35650_circ_g.2 AT2G35650_circ_g.4 AT2G35650_circ_g.5 AT2G35650_circ_g.6 AT2G35650_circ_g.7
Support reads 11/3
Tissues whole_plant/seedlings
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G35650.2:5
AT2G35650.4:5
AT2G35650.3:5
AT2G35650.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCCGGGGGATGGAATGACCAGACAACAGTAGAAGACATGGATTTAGCTGTACGAGCTACACTG
AGAGGCTGGAAGTTTCTATATATCGATGATCTCAAGtctcaagctggaagttctaaaacatcag
tggcattcctcaatgccttcaaatcagaagatatcattgctcgaattggactatggtggcagct
tataaggg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 925
Transcript exons: 14986064-14986393,14986476-14986569,14986704-14986956,14
987048-14987158,14987229-14987365
TCTCAAGCTGGAAGTTCTAAAACATCAGTGGCATTCCTCAATGCCTTCAAATCAGAAGATATCA
TTGCTCGAATTGGACTATGGTGGCAGCTTATAAGGGCTGTTGTAGTTGTACCTGTCTTCAAGTT
CCTGGTGCTTCTATGTTTGGTCATGTCTGTCATGTTCTTCGTTGAGGTTATGTACATGGGAATC
GTTGTTTTGTATGTCAAGCTGTTCAAGAGAAAGCCAGAGAAATTTTACAAATGGGAAGCCATGG
AGGATGATGTTGAGTGTGGCAGTGCAAGCTACCCTATGGTTCTTGTGCAGATACCTATGTACAA
TGAAAAAGAGGTTTGTGAGCAATCTATTGCAGCTGCTTGCAAAATCTCATGGCCATCGAATCGT
ATAATAATTCAAGTGCTTGATGATTCCACGGATCCAGCCAGAGTTGGTGAAAAAGGAGTGTGAC
AGATGGTCTAAAGAAGGTGTCAACATAACGTTTGAGATAAGGGACAACAGGAACGGATACAAAG
CTGGTGCGTTGAGAGAAGGAATGAGGCATAGCTATGTGAAGCAGTGTGATTATGTTGCTATCTT
TGATGCTGATTTCCAGCCTGATCCTGACTTCCTCCACCGCACTGTTCCATTCTTAATTCACAAT
CCCAAGTTAGCACTTGTACAAGGCCGGTGGGAGTTTGTGAACGCGGGTCAATGCATGATGACGA
GATTACAGGAGATGTCTCTAAGTTACCACTTTACAATAGAGCAGCAAGTTGGATCTTCAACATT
TGCCTTCTTTGGGTTCAACGGAACTGCTGGCGTCTGGAGAATCTCAGCATTGAATGAGTCCGGG
GGATGGAATGACCAGACAACAGTAGAAGACATGGATTTAGCTGTACGAGCTACACTGAGAGGCT
GGAAGTTTCTATATATCGATGATCTCAAG

Transcript length: 930
Transcript exons: 14986064-14986393,14986476-14986574,14986704-14986956,14
987048-14987158,14987229-14987365
TCTCAAGCTGGAAGTTCTAAAACATCAGTGGCATTCCTCAATGCCTTCAAATCAGAAGATATCA
TTGCTCGAATTGGACTATGGTGGCAGCTTATAAGGGCTGTTGTAGTTGTACCTGTCTTCAAGTT
CCTGGTGCTTCTATGTTTGGTCATGTCTGTCATGTTCTTCGTTGAGGTTATGTACATGGGAATC
GTTGTTTTGTATGTCAAGCTGTTCAAGAGAAAGCCAGAGAAATTTTACAAATGGGAAGCCATGG
AGGATGATGTTGAGTGTGGCAGTGCAAGCTACCCTATGGTTCTTGTGCAGATACCTATGTACAA
TGAAAAAGAGGTTTGTGAGCAATCTATTGCAGCTGCTTGCAAAATCTCATGGCCATCGAATCGT
ATAATAATTCAAGTGCTTGATGATTCCACGGATCCAGCCAGTAAGGAGTTGGTGAAAAAGGAGT
GTGACAGATGGTCTAAAGAAGGTGTCAACATAACGTTTGAGATAAGGGACAACAGGAACGGATA
CAAAGCTGGTGCGTTGAGAGAAGGAATGAGGCATAGCTATGTGAAGCAGTGTGATTATGTTGCT
ATCTTTGATGCTGATTTCCAGCCTGATCCTGACTTCCTCCACCGCACTGTTCCATTCTTAATTC
ACAATCCCAAGTTAGCACTTGTACAAGGCCGGTGGGAGTTTGTGAACGCGGGTCAATGCATGAT
GACGAGATTACAGGAGATGTCTCTAAGTTACCACTTTACAATAGAGCAGCAAGTTGGATCTTCA
ACATTTGCCTTCTTTGGGTTCAACGGAACTGCTGGCGTCTGGAGAATCTCAGCATTGAATGAGT
CCGGGGGATGGAATGACCAGACAACAGTAGAAGACATGGATTTAGCTGTACGAGCTACACTGAG
AGGCTGGAAGTTTCTATATATCGATGATCTCAAG

Genomic sequence TCTCAAGCTGGAAGTTCTAAAACATCAGTGGCATTCCTCAATGCCTTCAAATCAGAAGATATCA
TTGCTCGAATTGGACTATGGTGGCAGCTTATAAGGGCTGTTGTAGTTGTACCTGTCTTCAAGTT
CCTGGTGCTTCTATGTTTGGTCATGTCTGTCATGTTCTTCGTTGAGGTTATGTACATGGGAATC
GTTGTTTTGTATGTCAAGCTGTTCAAGAGAAAGCCAGAGAAATTTTACAAATGGGAAGCCATGG
AGGATGATGTTGAGTGTGGCAGTGCAAGCTACCCTATGGTTCTTGTGCAGATACCTATGTACAA
TGAAAAAGAGGTAGTTACTGAACCAGCAACTATTTTTCCAGTGATTGGTTTGTAGTTGAACTTA
TTTGGTGGGATGTTAATGTTTGTGGTAGGTTTGTGAGCAATCTATTGCAGCTGCTTGCAAAATC
TCATGGCCATCGAATCGTATAATAATTCAAGTGCTTGATGATTCCACGGATCCAGCCAGTAAGG
TCCTTGTTTAACCTCTATAGACACTTGTCCCTTTCTCGTCTAAATCCCTCTGTTTTAGACTCAT
GATTGTGTTGTGTTAAAGTGAGTTCCTTAACATTTGATTATGTGGCAATGATGGAAGGAAACAG
GAGTTGGTGAAAAAGGAGTGTGACAGATGGTCTAAAGAAGGTGTCAACATAACGTTTGAGATAA
GGGACAACAGGAACGGATACAAAGCTGGTGCGTTGAGAGAAGGAATGAGGCATAGCTATGTGAA
GCAGTGTGATTATGTTGCTATCTTTGATGCTGATTTCCAGCCTGATCCTGACTTCCTCCACCGC
ACTGTTCCATTCTTAATTCACAATCCCAAGTTAGCACTTGTACAAGGCCGGTGGGAGTTTGGTA
ACATTCCTTAGTTACCTTTCTTTTCTTTTTCCATCATAAGTTTATAGATTGTACATGCTTTGAG
ATTTTTCTTTGCAAACAATCTCAGTGAACGCGGGTCAATGCATGATGACGAGATTACAGGAGAT
GTCTCTAAGTTACCACTTTACAATAGAGCAGCAAGTTGGATCTTCAACATTTGCCTTCTTTGGG
TTCAACGGTATAGCATTCTCAATTTTCTTTTCTTTTCTCTCCATAAAGCTTTTTCTTATTCTCT
GAAACTATTGCAGGAACTGCTGGCGTCTGGAGAATCTCAGCATTGAATGAGTCCGGGGGATGGA
ATGACCAGACAACAGTAGAAGACATGGATTTAGCTGTACGAGCTACACTGAGAGGCTGGAAGTT
TCTATATATCGATGATCTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.253571641
Functional Information
Coding potential Y
Potential coding position 14986214-14987362(+)
Potential amino acid sequence MSVMFFVEVMYMGIVVLYVKLFKRKPEKFYKWEAMEDDVECGSASYPMVLVQIPMYNEKEVCEQ
SIAAACKISWPSNRIIIQVLDDSTDPASKELVKKECDRWSKEGVNITFEIRDNRNGYKAGALRE
GMRHSYVKQCDYVAIFDADFQPDPDFLHRTVPFLIHNPKLALVQGRWEFVNAGQCMMTRLQEMS
LSYHFTIEQQVGSSTFAFFGFNGTAGVWRISALNESGGWNDQTTVEDMDLAVRATLRGWKFLYI
DDLKSQAGSSKTSVAFLNAFKSEDIIARIGLWWQLIRAVVVVPVFKFLVLLCLVMSVMFFVEVM
YMGIVVLYVKLFKRKPEKFYKWEAMEDDVECGSASYPMVLVQIPMYNEKEVCEQSIAAACKISW
PSNRIIIQVLDDSTDPASKELVKKECDRWSKEGVNITFEIRDNRNGYKAGALREGMRHSYVKQC
DYVAIFDADFQPDPDFLHRTVPFLIHNPKLALVQGRWEFVNAGQCMMTRLQEMSLSYHFTIEQQ
VGSSTFAFFGFNGTAGVWRISALNESGGWNDQTTVEDMDLAVRATLRGWKFLYIDDLKSQAGSS
KTSVAFLNAFKSEDIIARIGLWWQLIRAVVVVPVFKFLVLLCLVMSVMFFVEVMYMGIVVLYVK
LFKRKPEKFYKWEAMEDDVECGSASYPMVLVQIPMYNEKEVCEQSIAAACKISWPSNRIIIQVL
DDSTDPASKELVKKECDRWSKEGVNITFEIRDNRNGYKAGALREGMRHSYVKQCDYVAIFDADF
QPDPDFLHRTVPFLIHNPKLALVQGRWEFVNAGQCMMTRLQEMSLSYHFTIEQQVGSSTFAFFG
FNGTAGVWRISALNESGGWNDQTTVEDMDLAVRATLRGWKFLYIDDLKSQAGSSKTSVAFLNAF
KSEDIIARIGLWWQLIRAVVVVPVFKFLVLLCLVMSVMFFVEVMYMGIVVLYVKLFKRKPEKFY
KWEAMEDDVECGSASYPMVLVQIPMYNEKEVCEQSIAAACKISWPSNRIIIQVLDDSTDPASKE
LVKKECDRWSKEGVNITFEIRDNRNGYKAGALREGMRHSYVKQCDYVAIFDADFQPDPDFLHRT
VPFLIHNPKLALVQGRWEFVNAGQCMMTRLQEMSLSYHFTIEQQVGSSTFAFFGFNGTAGVWRI
SALNESGGWNDQTTVEDMDLAVRATLRGWKFLYIDDLK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA