Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | AT2G35650_circ_g.3 |
| ID in PlantcircBase | ath_circ_016669 |
| Alias | Ath_circ_FC1509, Ath_circ_FC1510 |
| Organism | Arabidpsis thaliana |
| Position | chr2: 14986064-14987365 JBrowse» |
| Reference genome | TAIR10.38 |
| Type | ue-circRNA |
| Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ |
| Parent gene | AT2G35650 |
| Parent gene annotation |
Probable mannan synthase 7 |
| Parent gene strand | + |
| Alternative splicing | AT2G35650_circ_g.2 AT2G35650_circ_g.4 AT2G35650_circ_g.5 AT2G35650_circ_g.6 AT2G35650_circ_g.7 |
| Support reads | 11/3 |
| Tissues | whole_plant/seedlings |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | AT2G35650.2:5 AT2G35650.4:5 AT2G35650.3:5 AT2G35650.1:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.253571641 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
14986214-14987362(+) |
| Potential amino acid sequence |
MSVMFFVEVMYMGIVVLYVKLFKRKPEKFYKWEAMEDDVECGSASYPMVLVQIPMYNEKEVCEQ SIAAACKISWPSNRIIIQVLDDSTDPASKELVKKECDRWSKEGVNITFEIRDNRNGYKAGALRE GMRHSYVKQCDYVAIFDADFQPDPDFLHRTVPFLIHNPKLALVQGRWEFVNAGQCMMTRLQEMS LSYHFTIEQQVGSSTFAFFGFNGTAGVWRISALNESGGWNDQTTVEDMDLAVRATLRGWKFLYI DDLKSQAGSSKTSVAFLNAFKSEDIIARIGLWWQLIRAVVVVPVFKFLVLLCLVMSVMFFVEVM YMGIVVLYVKLFKRKPEKFYKWEAMEDDVECGSASYPMVLVQIPMYNEKEVCEQSIAAACKISW PSNRIIIQVLDDSTDPASKELVKKECDRWSKEGVNITFEIRDNRNGYKAGALREGMRHSYVKQC DYVAIFDADFQPDPDFLHRTVPFLIHNPKLALVQGRWEFVNAGQCMMTRLQEMSLSYHFTIEQQ VGSSTFAFFGFNGTAGVWRISALNESGGWNDQTTVEDMDLAVRATLRGWKFLYIDDLKSQAGSS KTSVAFLNAFKSEDIIARIGLWWQLIRAVVVVPVFKFLVLLCLVMSVMFFVEVMYMGIVVLYVK LFKRKPEKFYKWEAMEDDVECGSASYPMVLVQIPMYNEKEVCEQSIAAACKISWPSNRIIIQVL DDSTDPASKELVKKECDRWSKEGVNITFEIRDNRNGYKAGALREGMRHSYVKQCDYVAIFDADF QPDPDFLHRTVPFLIHNPKLALVQGRWEFVNAGQCMMTRLQEMSLSYHFTIEQQVGSSTFAFFG FNGTAGVWRISALNESGGWNDQTTVEDMDLAVRATLRGWKFLYIDDLKSQAGSSKTSVAFLNAF KSEDIIARIGLWWQLIRAVVVVPVFKFLVLLCLVMSVMFFVEVMYMGIVVLYVKLFKRKPEKFY KWEAMEDDVECGSASYPMVLVQIPMYNEKEVCEQSIAAACKISWPSNRIIIQVLDDSTDPASKE LVKKECDRWSKEGVNITFEIRDNRNGYKAGALREGMRHSYVKQCDYVAIFDADFQPDPDFLHRT VPFLIHNPKLALVQGRWEFVNAGQCMMTRLQEMSLSYHFTIEQQVGSSTFAFFGFNGTAGVWRI SALNESGGWNDQTTVEDMDLAVRATLRGWKFLYIDDLK(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017;Pan et al., 2017;Chen et al., 2017a |