Detail information of Os06g0199200_circ_g.8


General Information
CircRNA Name Os06g0199200_circ_g.8
ID in PlantcircBase osa_circ_042279
Alias NA
Organism Oryza sativa
Position chr6: 5037636-5038017  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0199200
Parent gene annotation Smr protein/MutS2 C-terminal domain containing protein. (Os06t01
99200-01);Similar to smr domain containing protein. (Os06t019920
0-03);Smr protein/MutS2 C-terminal domain containing protein. (O
s06t0199200-04);Smr protein/MutS2 C-terminal domain containing p
rotein. (Os06t0199200-05);Similar to smr domain containing prote
in. (Os06t0199200-06)
Parent gene strand -
Alternative splicing Os06g0199200_circ_g.7 Os06g0199200_circ_g.9 Os06g0199200_circ_g.10 Os06g0199200_circ_g.11 Os06g0199200_circ_g.12 Os06g0199200_circ_g.13 Os06g0199200_circ_g.14 Os06g0199200_circ_g.15
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0199200-06:1
Os06t0199200-04:1
Os06t0199200-01:1
Os06t0199200-05:1
Os06t0199200-03:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTTTGGTCTTCAACTGTTGGCAGTGCGGGGAAGTCCCCTGTGCTAAAGTTTGGTGTCCTGGG
GGTCAGAGTTGGATTGGAGGTAGCATCAACTTGCATctactgcatctccagtttcgagccatgg
agcagctcttgcactgctaacactttgaaacttgtttccagaagatgttttggtcgtagaactg
tactgctt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 382
Transcript exons: 5037636-5038017
CTACTGCATCTCCAGTTTCGAGCCATGGAGCAGCTCTTGCACTGCTAACACTTTGAAACTTGTT
TCCAGAAGATGTTTTGGTCGTAGAACTGTACTGCTTGGGTACAGAAACAGTTGAAACACCATTA
CCGTATTCAGGACCTTTCTTATACTTCCAATGGCCAGAATTTTGCGATGCAAGTTTGCGAACAG
CTGAAACAAAATCACCAGTACCAGTAGATACAGAGGGTGAGCTGCGTCCATTGAAGATGCTTAG
AATATCTGCATTGCCTTTGGAAAAACCATTTTGGTCTTCAACTGTTGGCAGTGCGGGGAAGTCC
CCTGTGCTAAAGTTTGGTGTCCTGGGGGTCAGAGTTGGATTGGAGGTAGCATCAACTTGCAT

Genomic sequence CTACTGCATCTCCAGTTTCGAGCCATGGAGCAGCTCTTGCACTGCTAACACTTTGAAACTTGTT
TCCAGAAGATGTTTTGGTCGTAGAACTGTACTGCTTGGGTACAGAAACAGTTGAAACACCATTA
CCGTATTCAGGACCTTTCTTATACTTCCAATGGCCAGAATTTTGCGATGCAAGTTTGCGAACAG
CTGAAACAAAATCACCAGTACCAGTAGATACAGAGGGTGAGCTGCGTCCATTGAAGATGCTTAG
AATATCTGCATTGCCTTTGGAAAAACCATTTTGGTCTTCAACTGTTGGCAGTGCGGGGAAGTCC
CCTGTGCTAAAGTTTGGTGTCCTGGGGGTCAGAGTTGGATTGGAGGTAGCATCAACTTGCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.393699193
Functional Information
Coding potential Y
Potential coding position 5037885-5037750(+)
5038019-5038009(-)
Potential amino acid sequence MLRISALPLEKPFWSSTVGSAGKSPVLKFGVLGVRVGLEVASTCIYCISSFEPWSSSCTANTLK
LVSRRCFGRRTVLLGYRNS*(+)
MQVDATSNPTLTPRTPNFSTGDFPALPTVEDQNGFSKGNADILSIFNGRSSPSVSTGTGDFVSA
VRKLASQNSGHWKYKKGPEYGNGVSTVSVPKQYSSTTKTSSGNKFQSVSSARAAPWLETGDAVD
AS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study