Plant Circular RNA Database

Detail information of Os06g0199200_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os06g0199200_circ_g.7
					
						ID in PlantcircBase
						osa_circ_030093
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 5037440-5038017  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0199200						
					
						Parent gene annotation
						
							Smr protein/MutS2 C-terminal domain containing protein. (Os06t01
99200-01);Similar to smr domain containing protein. (Os06t019920
0-03);Smr protein/MutS2 C-terminal domain containing protein. (O
s06t0199200-04);Smr protein/MutS2 C-terminal domain containing p
rotein. (Os06t0199200-05);Similar to smr domain containing prote
in. (Os06t0199200-06)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0199200_circ_g.8 Os06g0199200_circ_g.9 Os06g0199200_circ_g.10 Os06g0199200_circ_g.11 Os06g0199200_circ_g.12 Os06g0199200_circ_g.13 Os06g0199200_circ_g.14 Os06g0199200_circ_g.15 						
					
						Support reads
						1
					
						Tissues
						shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0199200-04:2
Os06t0199200-06:2
Os06t0199200-03:1
Os06t0199200-01:2
Os06t0199200-05:2

General Information
CircRNA Name	Os06g0199200_circ_g.7
ID in PlantcircBase	osa_circ_030093
Alias	NA
Organism	Oryza sativa
Position	chr6: 5037440-5038017 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0199200
Parent gene annotation	Smr protein/MutS2 C-terminal domain containing protein. (Os06t01 99200-01);Similar to smr domain containing protein. (Os06t019920 0-03);Smr protein/MutS2 C-terminal domain containing protein. (O s06t0199200-04);Smr protein/MutS2 C-terminal domain containing p rotein. (Os06t0199200-05);Similar to smr domain containing prote in. (Os06t0199200-06)
Parent gene strand	-
Alternative splicing	Os06g0199200_circ_g.8 Os06g0199200_circ_g.9 Os06g0199200_circ_g.10 Os06g0199200_circ_g.11 Os06g0199200_circ_g.12 Os06g0199200_circ_g.13 Os06g0199200_circ_g.14 Os06g0199200_circ_g.15
Support reads	1
Tissues	shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0199200-04:2 Os06t0199200-06:2 Os06t0199200-03:1 Os06t0199200-01:2 Os06t0199200-05:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CATTTTGGTCTTCAACTGTTGGCAGTGCGGGGAAGTCCCCTGTGCTAAAGTTTGGTGTCCTGGG
GGTCAGAGTTGGATTGGAGGTAGCATCAACTTGCATctgctcaaaacatgcatttcggatgcgg
gcaaaatcacgggcttctccccttgattctgagtacatgtttgctattgatttgcatataaaca
taaagaga

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 453
Transcript exons: 5037440-5037510,5037636-5038017
CTGCTCAAAACATGCATTTCGGATGCGGGCAAAATCACGGGCTTCTCCCCTTGATTCTGAGTAC
ATGTTTGCTACTGCATCTCCAGTTTCGAGCCATGGAGCAGCTCTTGCACTGCTAACACTTTGAA
ACTTGTTTCCAGAAGATGTTTTGGTCGTAGAACTGTACTGCTTGGGTACAGAAACAGTTGAAAC
ACCATTACCGTATTCAGGACCTTTCTTATACTTCCAATGGCCAGAATTTTGCGATGCAAGTTTG
CGAACAGCTGAAACAAAATCACCAGTACCAGTAGATACAGAGGGTGAGCTGCGTCCATTGAAGA
TGCTTAGAATATCTGCATTGCCTTTGGAAAAACCATTTTGGTCTTCAACTGTTGGCAGTGCGGG
GAAGTCCCCTGTGCTAAAGTTTGGTGTCCTGGGGGTCAGAGTTGGATTGGAGGTAGCATCAACT
TGCAT
						
						Genomic sequence
						
							CTGCTCAAAACATGCATTTCGGATGCGGGCAAAATCACGGGCTTCTCCCCTTGATTCTGAGTAC
ATGTTTGCTATTGATTTGCATATAAACATAAAGAGATCAGTCTATAGTTGTGGAACAGAATAAA
TCATCAAACATACAGGAGGGAAACACGCTATCCACACAAATGACTTGGTATATCAAGATGGGCA
TTACCTACTGCATCTCCAGTTTCGAGCCATGGAGCAGCTCTTGCACTGCTAACACTTTGAAACT
TGTTTCCAGAAGATGTTTTGGTCGTAGAACTGTACTGCTTGGGTACAGAAACAGTTGAAACACC
ATTACCGTATTCAGGACCTTTCTTATACTTCCAATGGCCAGAATTTTGCGATGCAAGTTTGCGA
ACAGCTGAAACAAAATCACCAGTACCAGTAGATACAGAGGGTGAGCTGCGTCCATTGAAGATGC
TTAGAATATCTGCATTGCCTTTGGAAAAACCATTTTGGTCTTCAACTGTTGGCAGTGCGGGGAA
GTCCCCTGTGCTAAAGTTTGGTGTCCTGGGGGTCAGAGTTGGATTGGAGGTAGCATCAACTTGC
AT

Sequences
Splice junction sequence	CATTTTGGTCTTCAACTGTTGGCAGTGCGGGGAAGTCCCCTGTGCTAAAGTTTGGTGTCCTGGG GGTCAGAGTTGGATTGGAGGTAGCATCAACTTGCATctgctcaaaacatgcatttcggatgcgg gcaaaatcacgggcttctccccttgattctgagtacatgtttgctattgatttgcatataaaca taaagaga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 453 Transcript exons: 5037440-5037510,5037636-5038017 CTGCTCAAAACATGCATTTCGGATGCGGGCAAAATCACGGGCTTCTCCCCTTGATTCTGAGTAC ATGTTTGCTACTGCATCTCCAGTTTCGAGCCATGGAGCAGCTCTTGCACTGCTAACACTTTGAA ACTTGTTTCCAGAAGATGTTTTGGTCGTAGAACTGTACTGCTTGGGTACAGAAACAGTTGAAAC ACCATTACCGTATTCAGGACCTTTCTTATACTTCCAATGGCCAGAATTTTGCGATGCAAGTTTG CGAACAGCTGAAACAAAATCACCAGTACCAGTAGATACAGAGGGTGAGCTGCGTCCATTGAAGA TGCTTAGAATATCTGCATTGCCTTTGGAAAAACCATTTTGGTCTTCAACTGTTGGCAGTGCGGG GAAGTCCCCTGTGCTAAAGTTTGGTGTCCTGGGGGTCAGAGTTGGATTGGAGGTAGCATCAACT TGCAT
Genomic sequence	CTGCTCAAAACATGCATTTCGGATGCGGGCAAAATCACGGGCTTCTCCCCTTGATTCTGAGTAC ATGTTTGCTATTGATTTGCATATAAACATAAAGAGATCAGTCTATAGTTGTGGAACAGAATAAA TCATCAAACATACAGGAGGGAAACACGCTATCCACACAAATGACTTGGTATATCAAGATGGGCA TTACCTACTGCATCTCCAGTTTCGAGCCATGGAGCAGCTCTTGCACTGCTAACACTTTGAAACT TGTTTCCAGAAGATGTTTTGGTCGTAGAACTGTACTGCTTGGGTACAGAAACAGTTGAAACACC ATTACCGTATTCAGGACCTTTCTTATACTTCCAATGGCCAGAATTTTGCGATGCAAGTTTGCGA ACAGCTGAAACAAAATCACCAGTACCAGTAGATACAGAGGGTGAGCTGCGTCCATTGAAGATGC TTAGAATATCTGCATTGCCTTTGGAAAAACCATTTTGGTCTTCAACTGTTGGCAGTGCGGGGAA GTCCCCTGTGCTAAAGTTTGGTGTCCTGGGGGTCAGAGTTGGATTGGAGGTAGCATCAACTTGC AT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_006587* osi_circ_016771 						
					
						PMCS
						0.337383737

Conservation Information
Conserved circRNAs	osi_circ_006587* osi_circ_016771
PMCS	0.337383737

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							5037885-5037688(+)
5038019-5037442(-)
						
						Potential amino acid sequence
						
							MLRISALPLEKPFWSSTVGSAGKSPVLKFGVLGVRVGLEVASTCICSKHAFRMRAKSRASPLDS
EYMFATASPVSSHGAALALLTL*(+)
MQVDATSNPTLTPRTPNFSTGDFPALPTVEDQNGFSKGNADILSIFNGRSSPSVSTGTGDFVSA
VRKLASQNSGHWKYKKGPEYGNGVSTVSVPKQYSSTTKTSSGNKFQSVSSARAAPWLETGDAVA
NMYSESRGEARDFARIRNACFEQMQVDATSNPTLTPRTPNFSTGDFPALPTVEDQNGFSKGNAD
ILSIFNGRSSPSVSTGTGDFVSAVRKLASQNSGHWKYKKGPEYGNGVSTVSVPKQYSSTTKTSS
GNKFQSVSSARAAPWLETGDAVANMYSESRGEARDFARIRNACFEQMQVDATSNPTLTPRTPNF
STGDFPALPTVEDQNGFSKGNADILSIFNGRSSPSVSTGTGDFVSAVRKLASQNSGHWKYKKGP
EYGNGVSTVSVPKQYSSTTKTSSGNKFQSVSSARAAPWLETGDAVANMYSESRGEARDFARIRN
ACFEQMQVDATSNPTLTPRTPNFSTGDFPALPTVEDQNGFSKGNADILSIFNGRSSPSVSTGTG
DFVSAVRKLASQNSGHWKYKKGPEYGNGVSTVSVPKQYSSTTKTSSGNKFQSVSSARAAPWLET
GDAVANMYSESRGEARDFARIRNACFEQ(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	5037885-5037688(+) 5038019-5037442(-)
Potential amino acid sequence	MLRISALPLEKPFWSSTVGSAGKSPVLKFGVLGVRVGLEVASTCICSKHAFRMRAKSRASPLDS EYMFATASPVSSHGAALALLTL*(+) MQVDATSNPTLTPRTPNFSTGDFPALPTVEDQNGFSKGNADILSIFNGRSSPSVSTGTGDFVSA VRKLASQNSGHWKYKKGPEYGNGVSTVSVPKQYSSTTKTSSGNKFQSVSSARAAPWLETGDAVA NMYSESRGEARDFARIRNACFEQMQVDATSNPTLTPRTPNFSTGDFPALPTVEDQNGFSKGNAD ILSIFNGRSSPSVSTGTGDFVSAVRKLASQNSGHWKYKKGPEYGNGVSTVSVPKQYSSTTKTSS GNKFQSVSSARAAPWLETGDAVANMYSESRGEARDFARIRNACFEQMQVDATSNPTLTPRTPNF STGDFPALPTVEDQNGFSKGNADILSIFNGRSSPSVSTGTGDFVSAVRKLASQNSGHWKYKKGP EYGNGVSTVSVPKQYSSTTKTSSGNKFQSVSSARAAPWLETGDAVANMYSESRGEARDFARIRN ACFEQMQVDATSNPTLTPRTPNFSTGDFPALPTVEDQNGFSKGNADILSIFNGRSSPSVSTGTG DFVSAVRKLASQNSGHWKYKKGPEYGNGVSTVSVPKQYSSTTKTSSGNKFQSVSSARAAPWLET GDAVANMYSESRGEARDFARIRNACFEQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0199200_circ_g.7

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