Detail information of Os11g0518900_circ_g.1


General Information
CircRNA Name Os11g0518900_circ_g.1
ID in PlantcircBase osa_circ_009428
Alias NA
Organism Oryza sativa
Position chr11: 18644014-18644572  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0518900
Parent gene annotation Conserved hypothetical protein. (Os11t0518900-01);Hypothetical c
onserved gene. (Os11t0518900-02)
Parent gene strand +
Alternative splicing Os11g0518900_circ_g.2
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0518900-02:4
Os11t0518900-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGCATCTTGTATAATATTTATAATATACAGGGTCAAATGGATGTTCTTGTAGAGATAGCTCAT
CAGTTAGCTTTTGCAGAAGAGAGAAAAAACTACGAGcggaagatgcctggagcatattcagagc
aacgtgctgatcgaatttccaaatggacttgtgaacttattaaatcgaagccttacatcaaggt
gcttttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGAAGATGCCTGGAGCATATTCAGAGCAACGTGCTGATCGAATTTCCAAATGGACTTGTGAAC
TTATTAAATCGAAGCCTTACATCAAGGTGCTTTTCTTGCTTACTATTTTTTTTTTGAGTTAAAG
TATCATAATATACCTGGATGTTTCAATACTGTATGTGTACTTGAATTCTTTGCAGCTCTCTAAT
GGTTGGAACAATGCTATGAATCGATTGAAGGAAAACTTTGTGATAAATGTAGATACTAAACCGG
ATGCAATAGATGCAGTTAATGTGCGTATTATCCTTAATTCAATGTTGTTGCTAAAAGTATTATT
TGGAAATTATTCTGACAATTGTTGCTCTGTTAGATCTTCTACAATTCAATATTGCTTCTTTGGG
AACCTCAGTTTCATCCTTTAATCAGGGAGGTGAGCTGCCCTTACACCCTCCAAAAGTCCCTCTC
TGTTTCTTACTGTGCATCTTGTATAATATTTATAATATACAGGGTCAAATGGATGTTCTTGTAG
AGATAGCTCATCAGTTAGCTTTTGCAGAAGAGAGAAAAAACTACGAG
Conservation Information
Conserved circRNAs osi_circ_003164*
PMCS 0.111242815
Functional Information
Coding potential Y
Potential coding position 18644021-18644569(+)
18644034-18644421(-)
Potential amino acid sequence MPGAYSEQRADRISKWTCELIKSKPYIKLSNGWNNAMNRLKENFVINVDTKPDAIDAVNIFYNS
ILLLWEPQFHPLIREGQMDVLVEIAHQLAFAEERKNYERKMPGAYSEQRADRISKWTCELIKSK
PYIKLSNGWNNAMNRLKENFVINVDTKPDAIDAVNIFYNSILLLWEPQFHPLIREGQMDVLVEI
AHQLAFAEERKNYERKMPGAYSEQRADRISKWTCELIKSKPYIKLSNGWNNAMNRLKENFVINV
DTKPDAIDAVNIFYNSILLLWEPQFHPLIREGQMDVLVEIAHQLAFAEERKNYERKMPGAYSEQ
RADRISKWTCELIKSKPYIKLSNGWNNAMNRLKENFVINVDTKPDAIDAVNIFYNSILLLWEPQ
FHPLIREGQMDVLVEIAHQLAFAEERKNYE(+)
MLQASSARSFFSLLQKLTDELSLQEHPFDPP*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017