Detail information of BGIOSGA035346_circ_g.3


General Information
CircRNA Name BGIOSGA035346_circ_g.3
ID in PlantcircBase osi_circ_003164
Alias 11:15407890|15408447
Organism Oryza sativa ssp. indica
Position chr11: 15407890-15408447  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA035346
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA035346_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA035346-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGCATCTTGTATAATATTTATAATATACAGGGTCAAATGGATGTTCTTGTAGAGATAGCTCAT
CAGTTAGCTTTTGCAGAAGAGAGAAAAAACTACGAGcggaagatgcctggagcatattcagagc
aacgtgctgatcgaatttccaaatggacttgtgaacttattaaatcgaagccttacatcaaggt
gcttttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGAAGATGCCTGGAGCATATTCAGAGCAACGTGCTGATCGAATTTCCAAATGGACTTGTGAAC
TTATTAAATCGAAGCCTTACATCAAGGTGCTTTTCTTGCTTACTATTTTTTTTTGAGTTAAAGT
ATCATAATATACCTGGATGTTTCAATACTGTATGTGTACTTGAATTCTTTGCAGCTCTCTAATG
GTTGGAACAATGCTATGAATCGATTGAAGGAAAACTTTGTGATAAATGTAGATACTAAACCGGA
TGCAATAGATGCAGTTAATGTGCGTATTATCCTTAATTCAATGTTGTTGCTAAAAGTATTATTT
GGAAATTATTCTGACAATTGTTGCTCTGTTAGATCTTCTACAATTCAATATTGCTTCTTTGGGA
ACCTCAGTTTCATCCTTTAATCAGGGAGGTGAGCTGCCCTTACACCCTCCAAAAGTCCCTCTCT
GTTTCTTACTGTGCATCTTGTATAATATTTATAATATACAGGGTCAAATGGATGTTCTTGTAGA
GATAGCTCATCAGTTAGCTTTTGCAGAAGAGAGAAAAAACTACGAG
Conservation Information
Conserved circRNAs osa_circ_009428*
PMCS
Functional Information
Coding potential Y
Potential coding position 15407910-15408296(-)
15407897-15408444(+)
Potential amino acid sequence MLQASSARSFFSLLQKLTDELSLQEHPFDPP*(-)
MPGAYSEQRADRISKWTCELIKSKPYIKLSNGWNNAMNRLKENFVINVDTKPDAIDAVNIFYNS
ILLLWEPQFHPLIREGQMDVLVEIAHQLAFAEERKNYERKMPGAYSEQRADRISKWTCELIKSK
PYIKLSNGWNNAMNRLKENFVINVDTKPDAIDAVNIFYNSILLLWEPQFHPLIREGQMDVLVEI
AHQLAFAEERKNYERKMPGAYSEQRADRISKWTCELIKSKPYIKLSNGWNNAMNRLKENFVINV
DTKPDAIDAVNIFYNSILLLWEPQFHPLIREGQMDVLVEIAHQLAFAEERKNYERKMPGAYSEQ
RADRISKWTCELIKSKPYIKLSNGWNNAMNRLKENFVINVDTKPDAIDAVNIFYNSILLLWEPQ
FHPLIREGQMDVLVEIAHQLAFAEERKNYE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021