Detail information of AT2G21380_circ_g.1


General Information
CircRNA Name AT2G21380_circ_g.1
ID in PlantcircBase ath_circ_014194
Alias 2:9142319-9142617
Organism Arabidpsis thaliana
Position chr2: 9142319-9142617  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G21380
Parent gene annotation Kinesin-like protein KIN-7M, chloroplastic
Parent gene strand +
Alternative splicing AT2G21380_circ_g.2 AT2G21380_circ_g.3 AT2G21380_circ_g.4 AT2G21380_circ_g.5 AT2G21380_circ_g.6 AT2G21380_circ_g.7 AT2G21380_circ_g.8 AT2G21380_circ_g.9 AT2G21380_circ_g.10 AT2G21380_circ_g.11 AT2G21380_circ_g.12 AT2G21380_circ_g.13 AT2G21380_circ_g.14 AT2G21380_circ_g.15 AT2G21380_circ_g.16 AT2G21380_circ_g.17 AT2G21380_circ_g.18
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G21380.2:2
AT2G21380.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGATGCCAGATAAAGTTTTTGGACCACAGTCAACAACTCCAGAAGTATATGACGTAGCTGCTA
AACCTGTAGTCAAGGCTGCTATGGAAGGTGTTAACGtgagagggagtatcaacgaggagatgag
attgtttggtatcctgacgcagataagatggtcaggaatgaatacaatcccctcacagcttacg
catttggt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 188
Transcript exons: 9142319-9142416,9142528-9142617
TGAGAGGGAGTATCAACGAGGAGATGAGATTGTTTGGTATCCTGACGCAGATAAGATGGTCAGG
AATGAATACAATCCCCTCACAGCTTACGCATTTGATAAAGTTTTTGGACCACAGTCAACAACTC
CAGAAGTATATGACGTAGCTGCTAAACCTGTAGTCAAGGCTGCTATGGAAGGTGTTAACG

Genomic sequence TGAGAGGGAGTATCAACGAGGAGATGAGATTGTTTGGTATCCTGACGCAGATAAGATGGTCAGG
AATGAATACAATCCCCTCACAGCTTACGCATTTGGTATTGAGATCAATTTATTGCCGGAGATAA
TTTCAATTTACTGTTCATTGATTATAGATTTGGTCGCCTCCGTTTGTTCAATGAATGTTCTTCC
ATATTTGTTGATGCCAGATAAAGTTTTTGGACCACAGTCAACAACTCCAGAAGTATATGACGTA
GCTGCTAAACCTGTAGTCAAGGCTGCTATGGAAGGTGTTAACG
Conservation Information
Conserved circRNAs NA
PMCS 0.367238912
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020