Plant Circular RNA Database

Detail information of AT2G21380_circ_g.13

			
						 General Information
					
						CircRNA Name
						AT2G21380_circ_g.13
					
						ID in PlantcircBase
						ath_circ_014206
					
						Alias
						2:9145054-9146627
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 9145054-9146627  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT2G21380						
					
						Parent gene annotation
						
							Kinesin-like protein KIN-7M, chloroplastic
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT2G21380_circ_g.1 AT2G21380_circ_g.2 AT2G21380_circ_g.3 AT2G21380_circ_g.4 AT2G21380_circ_g.5 AT2G21380_circ_g.6 AT2G21380_circ_g.7 AT2G21380_circ_g.8 AT2G21380_circ_g.9 AT2G21380_circ_g.10 AT2G21380_circ_g.11 AT2G21380_circ_g.12 AT2G21380_circ_g.14 AT2G21380_circ_g.15 AT2G21380_circ_g.16 AT2G21380_circ_g.17 AT2G21380_circ_g.18 						
					
						Support reads
						2
					
						Tissues
						seedling
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G21380.1:6
AT2G21380.2:6

General Information
CircRNA Name	AT2G21380_circ_g.13
ID in PlantcircBase	ath_circ_014206
Alias	2:9145054-9146627
Organism	Arabidpsis thaliana
Position	chr2: 9145054-9146627 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT2G21380
Parent gene annotation	Kinesin-like protein KIN-7M, chloroplastic
Parent gene strand	+
Alternative splicing	AT2G21380_circ_g.1 AT2G21380_circ_g.2 AT2G21380_circ_g.3 AT2G21380_circ_g.4 AT2G21380_circ_g.5 AT2G21380_circ_g.6 AT2G21380_circ_g.7 AT2G21380_circ_g.8 AT2G21380_circ_g.9 AT2G21380_circ_g.10 AT2G21380_circ_g.11 AT2G21380_circ_g.12 AT2G21380_circ_g.14 AT2G21380_circ_g.15 AT2G21380_circ_g.16 AT2G21380_circ_g.17 AT2G21380_circ_g.18
Support reads	2
Tissues	seedling
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G21380.1:6 AT2G21380.2:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TATTCAAGAAAAGCAAAGACAAATGAAATCCTTGGAACAGAGAATAACTGAGAGTGGTGAAGCT
TCAATTGCTAATGCATCATCGATTGAGATGCAAGAGctcatatgtacagttactcctgcgtcaa
gcagtaccgaggaaactcataatactttgaagtttgccagcagggcaaagagaattgaaattaa
tgcctcac

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 822
Transcript exons: 9145054-9145161,9145294-9145425,9145515-9145697,9145828-
9145968,9146183-9146320,9146508-9146627
CTCATATGTACAGTTACTCCTGCGTCAAGCAGTACCGAGGAAACTCATAATACTTTGAAGTTTG
CCAGCAGGGCAAAGAGAATTGAAATTAATGCCTCACGCAATAAGATCATAGATGAGAAGTCATT
GATTAAGAAATATCAGAAAGAAATCTCGACCCTCAAAGTCGAACTTGATCAGCTAAGAAGGGGT
GTGCTAGTTGGTGTCAGTCACGAAGAGTTATTGAGCCTAAAGCAACAGCTACAAGAAGGTCAAG
TGAAGATGCAATCAAGATTGGAGGAAGAAGAAGAAGCTAAAGCAGCTCTAATGAGTAGAATCCA
AAAGCTTACAAAGCTCATACTTGTCTCTACCAAGAATTCTATTCCTGGATATTTAGGTGACACA
CCAGCTCATTCTCGCAGCATTTCTGCTGGTAAAGATGATAAGTTAGACTCTCTGCTCTTGGATA
GTGATAATCTGGCATCTCCATCTTCGACTCTCTCTCTAGCATCAGATGCGCGACGGTCTTCCAG
CAAGTTTAAGGATGAAAACTCTCCAGTTGGTTCTCGTGCAGAATTAACTCAAGGCGTTATGACT
CCCGATGAAATGGATCTCCTCGTTGAGCAAGTTAAGATGCTTGCTGGTGAGATAGCTTTCGGCA
CAAGCACACTAAAGCGTTTGGTGGATCAGTCCATGAATGATCCTGAAAACTCGAAAACCCAAAT
CCAGAATCTAGAAAATGATATTCAAGAAAAGCAAAGACAAATGAAATCCTTGGAACAGAGAATA
ACTGAGAGTGGTGAAGCTTCAATTGCTAATGCATCATCGATTGAGATGCAAGAG
						
					

						Genomic sequence
						
							CTCATATGTACAGTTACTCCTGCGTCAAGCAGTACCGAGGAAACTCATAATACTTTGAAGTTTG
CCAGCAGGGCAAAGAGAATTGAAATTAATGCCTCACGCAATAAGGTCATTTCTTAGGCTTTTGG
TCATGAAGTACTTGGCTTTTTCATACAAAAAAGAAGAAGAAGTATTTGACTTCTATTGATGGCA
TAACCTAAAATTCGGCTAAAAAATACATTGTTTCATATCTTGCAACAGATCATAGATGAGAAGT
CATTGATTAAGAAATATCAGAAAGAAATCTCGACCCTCAAAGTCGAACTTGATCAGCTAAGAAG
GGGTGTGCTAGTTGGTGTCAGTCACGAAGAGTTATTGAGCCTAAAGCAACAGGTTCTAACCTCC
CCGAGACCTTGTTATTTCATAAATGTTTGAGTTTATTCCTATTTGGTGAATAGATCGAGCTATC
AATTTATTAACAGCTACAAGAAGGTCAAGTGAAGATGCAATCAAGATTGGAGGAAGAAGAAGAA
GCTAAAGCAGCTCTAATGAGTAGAATCCAAAAGCTTACAAAGCTCATACTTGTCTCTACCAAGA
ATTCTATTCCTGGATATTTAGGTGACACACCAGCTCATTCTCGCAGCATTTCTGCTGGTAAAGA
TGATGTAAGTTTGTTATTTAGATCTGATTATCACTGTGTTCCTATATTCCTTTTTAACTGTTGC
ATGTTGGTTCCTCACTGCCCAAGAGGTTTGATACCTGATTGACTCATTCTGTTTTCTTTCTGCT
CTTCAGAAGTTAGACTCTCTGCTCTTGGATAGTGATAATCTGGCATCTCCATCTTCGACTCTCT
CTCTAGCATCAGATGCGCGACGGTCTTCCAGCAAGTTTAAGGATGAAAACTCTCCAGTTGGTTC
TCGTGCAGAATTAACTCAAGTAAGTTCTGGGATTCTTAGCGTATATAGTTTTACATTGAATTTC
GTTTATTAGAAGTTTGGTGTATTCTTGTTTTCAATCCAAATGGTTACAGAAAAGGGTGTTTAAT
GATTCAGTGTCGCATGCACCCATTTAACCTTTCTTTTATCCCATGAATATGATTTTTTCAGTGT
TTTTATCAGAAAATGACATTTGATAGTTGTGGCTATTACAGGGCGTTATGACTCCCGATGAAAT
GGATCTCCTCGTTGAGCAAGTTAAGATGCTTGCTGGTGAGATAGCTTTCGGCACAAGCACACTA
AAGCGTTTGGTGGATCAGTCCATGAATGATCCTGAAAACTCGAAAACCCAAGTAAAGATTCTTC
TTTATCTATCTAGAGAATTATATACCAGTATGACTGTGGTCTCCCTAATTTCAAGTTTTAACCC
TGAAAATCAGAAAATGCATCTCCAGATGCTGAACTTTATTAGCATTCCACTTTAAGCCATTTAT
TTACCTATAAGCATAACTACGGAACTTATTATATGCTGGCATGCAGATCCAGAATCTAGAAAAT
GATATTCAAGAAAAGCAAAGACAAATGAAATCCTTGGAACAGAGAATAACTGAGAGTGGTGAAG
CTTCAATTGCTAATGCATCATCGATTGAGATGCAAGAG
						
					

			
		

Sequences
Splice junction sequence	TATTCAAGAAAAGCAAAGACAAATGAAATCCTTGGAACAGAGAATAACTGAGAGTGGTGAAGCT TCAATTGCTAATGCATCATCGATTGAGATGCAAGAGctcatatgtacagttactcctgcgtcaa gcagtaccgaggaaactcataatactttgaagtttgccagcagggcaaagagaattgaaattaa tgcctcac
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 822 Transcript exons: 9145054-9145161,9145294-9145425,9145515-9145697,9145828- 9145968,9146183-9146320,9146508-9146627 CTCATATGTACAGTTACTCCTGCGTCAAGCAGTACCGAGGAAACTCATAATACTTTGAAGTTTG CCAGCAGGGCAAAGAGAATTGAAATTAATGCCTCACGCAATAAGATCATAGATGAGAAGTCATT GATTAAGAAATATCAGAAAGAAATCTCGACCCTCAAAGTCGAACTTGATCAGCTAAGAAGGGGT GTGCTAGTTGGTGTCAGTCACGAAGAGTTATTGAGCCTAAAGCAACAGCTACAAGAAGGTCAAG TGAAGATGCAATCAAGATTGGAGGAAGAAGAAGAAGCTAAAGCAGCTCTAATGAGTAGAATCCA AAAGCTTACAAAGCTCATACTTGTCTCTACCAAGAATTCTATTCCTGGATATTTAGGTGACACA CCAGCTCATTCTCGCAGCATTTCTGCTGGTAAAGATGATAAGTTAGACTCTCTGCTCTTGGATA GTGATAATCTGGCATCTCCATCTTCGACTCTCTCTCTAGCATCAGATGCGCGACGGTCTTCCAG CAAGTTTAAGGATGAAAACTCTCCAGTTGGTTCTCGTGCAGAATTAACTCAAGGCGTTATGACT CCCGATGAAATGGATCTCCTCGTTGAGCAAGTTAAGATGCTTGCTGGTGAGATAGCTTTCGGCA CAAGCACACTAAAGCGTTTGGTGGATCAGTCCATGAATGATCCTGAAAACTCGAAAACCCAAAT CCAGAATCTAGAAAATGATATTCAAGAAAAGCAAAGACAAATGAAATCCTTGGAACAGAGAATA ACTGAGAGTGGTGAAGCTTCAATTGCTAATGCATCATCGATTGAGATGCAAGAG
Genomic sequence	CTCATATGTACAGTTACTCCTGCGTCAAGCAGTACCGAGGAAACTCATAATACTTTGAAGTTTG CCAGCAGGGCAAAGAGAATTGAAATTAATGCCTCACGCAATAAGGTCATTTCTTAGGCTTTTGG TCATGAAGTACTTGGCTTTTTCATACAAAAAAGAAGAAGAAGTATTTGACTTCTATTGATGGCA TAACCTAAAATTCGGCTAAAAAATACATTGTTTCATATCTTGCAACAGATCATAGATGAGAAGT CATTGATTAAGAAATATCAGAAAGAAATCTCGACCCTCAAAGTCGAACTTGATCAGCTAAGAAG GGGTGTGCTAGTTGGTGTCAGTCACGAAGAGTTATTGAGCCTAAAGCAACAGGTTCTAACCTCC CCGAGACCTTGTTATTTCATAAATGTTTGAGTTTATTCCTATTTGGTGAATAGATCGAGCTATC AATTTATTAACAGCTACAAGAAGGTCAAGTGAAGATGCAATCAAGATTGGAGGAAGAAGAAGAA GCTAAAGCAGCTCTAATGAGTAGAATCCAAAAGCTTACAAAGCTCATACTTGTCTCTACCAAGA ATTCTATTCCTGGATATTTAGGTGACACACCAGCTCATTCTCGCAGCATTTCTGCTGGTAAAGA TGATGTAAGTTTGTTATTTAGATCTGATTATCACTGTGTTCCTATATTCCTTTTTAACTGTTGC ATGTTGGTTCCTCACTGCCCAAGAGGTTTGATACCTGATTGACTCATTCTGTTTTCTTTCTGCT CTTCAGAAGTTAGACTCTCTGCTCTTGGATAGTGATAATCTGGCATCTCCATCTTCGACTCTCT CTCTAGCATCAGATGCGCGACGGTCTTCCAGCAAGTTTAAGGATGAAAACTCTCCAGTTGGTTC TCGTGCAGAATTAACTCAAGTAAGTTCTGGGATTCTTAGCGTATATAGTTTTACATTGAATTTC GTTTATTAGAAGTTTGGTGTATTCTTGTTTTCAATCCAAATGGTTACAGAAAAGGGTGTTTAAT GATTCAGTGTCGCATGCACCCATTTAACCTTTCTTTTATCCCATGAATATGATTTTTTCAGTGT TTTTATCAGAAAATGACATTTGATAGTTGTGGCTATTACAGGGCGTTATGACTCCCGATGAAAT GGATCTCCTCGTTGAGCAAGTTAAGATGCTTGCTGGTGAGATAGCTTTCGGCACAAGCACACTA AAGCGTTTGGTGGATCAGTCCATGAATGATCCTGAAAACTCGAAAACCCAAGTAAAGATTCTTC TTTATCTATCTAGAGAATTATATACCAGTATGACTGTGGTCTCCCTAATTTCAAGTTTTAACCC TGAAAATCAGAAAATGCATCTCCAGATGCTGAACTTTATTAGCATTCCACTTTAAGCCATTTAT TTACCTATAAGCATAACTACGGAACTTATTATATGCTGGCATGCAGATCCAGAATCTAGAAAAT GATATTCAAGAAAAGCAAAGACAAATGAAATCCTTGGAACAGAGAATAACTGAGAGTGGTGAAG CTTCAATTGCTAATGCATCATCGATTGAGATGCAAGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.235839507

Conservation Information
Conserved circRNAs	NA
PMCS	0.235839507

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT2G21380_circ_g.13

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