Detail information of BGIOSGA018770_circ_ag.1


General Information
CircRNA Name BGIOSGA018770_circ_ag.1
ID in PlantcircBase osi_circ_015933
Alias Chr05:3492083_3496808(MH63RS2), Chr05:3358363_3363088(ZS97RS2), Chr05:3492083_3496808(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 3675264-3679989  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTGCCGTCGAGCCGGCGATGGCGAATTCACACCGTTGTTGTAATCCGCTCCCAGTGGCCTCA
TGAACGGGCTGAGGTGGTGAGTGTTCAAGCTCTCACcagatgaagtcgatgatgacgcggccgt
cggagaggcggccggtggggtggtggaagtaggtgcggccctccggcggcatgatccggatccc
ccccgccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGATGAAGTCGATGATGACGCGGCCGTCGGAGAGGCGGCCGGTGGGGTGGTGGAAGTAGGTGC
GGCCCTCCGGCGGCATGATCCGGATCCCCCCCGCCGCCGCCACGCCGCCGGTGTCGGAGTTGGA
GTCGCCGAAGTTGAACAGCACCACCCCGGCCGCCGCCGCCTGCTCACGCTCCTCCTCCGCGGCC
GTTGTAGCCGCCACTCCGGCTCCGGCGGCGGCGGCGGAGGCGTCCGCTCCCTCTCCGGCGGCGG
CGGTGGCGGCGACGACGGAGCCGAGGTTCTGCCTGACGGCGGCGCCCATGGCGGACGGCGAGAC
GAACGCGAGCGAGAGCACCATGACCGCCACCACCACCGCCGCGAGCACGCAGTAGTACTGCAGG
CGCAGGCTGATCACCTTGTTCCCGCCTCCACCTCCGCCGTTGGTGGGGCTCGCCATGGCCATCG
CGCGAGCTCGCCTGAGCTCTCGCCTTCGCGGAGGAAGAAGACGACGATGGCTGAGTTTCTCTTC
TCTTCTCTCTCAAAAAAAGAGCGGTGAGAAATGTGCGTACGCGTGTATACGCGTATATAGTGTG
ATTAGTGTGTGACTTGGGGTCTCGTGTGGTTAGGTGATAATTAGGAGTAATTAATTACTAGTAG
TAGTTTACTAGGACTAAGAGCACCCGCAATGGTAAAGTAAGGTGCTATATATAAAACATGTACA
CCTCAACAATAGACTAGATTAATAGTAAACCACTTCAATGGTATGTCTACATGGGTATCTATAG
CTCTCTAATCCATTGCCTCGTTTTTCTCTATAGACTATCTCCATGTTAGTAGATAGCTTTGCTC
TCTCTCTTCATTTAATCTCTTCCAAGTAGGAAAATATGCTGACATGGATCTCTTGTAGAGAACT
TATAGATAACCATTGTGGGTGCCCTAATGGTGATTAGCGAATGGACATCGAGATACTTAGTACT
TCATCCGGTTGATAATACTTATCGTTTTGGACAAGGGCACGGTCTCTAAAAAAACAATTTTGAC
TATTATTTTCCATAATAATATGTATTGTTAACAAATATATGATTTTATTAAAGTACTTTTTAAG
AATAATCTATACATGTAGTCATCATATTTAAAAGACAAATATTTTAAAAATGATTCATAATAAA
AATTTTAAAATTTGATCTCACTCTTATCTAAAACAACAAGTATTATCAACCCGAAGAAAGTATT
AGTATTATTTAGTTGGACATTTTTGTAGTTAAGACTTAAGAGTGGATTAGTTGGGTTTTGAATG
AGATCACACACTCCCTCTCCTCACTTTTTTGAACTTTTCATAGTTTATAGTACAAGATACATGT
TTGTTGGTGTGTGCTCCCTTTGTGTCATATTACAAATATTGCAAGTTATTTTGAGTTTTTCTTA
AGTTAAATTTCTTTATGTATTTAATGATACTAATTTGGTGTTGTAAATGTTGGTAATTTATTTT
TTTTCTTCTTATCGAACTTGGTTGAGTTTGATTTGGGACAAATCCAAAATAACTTATAATATGA
GATAGAGGGATTATATCATTTCTTTTTTTTCCTAATTACTTTAAATTTTACAATTGAAAATTTA
CATTTTTTTAATATAGGAGGTGTATGTACATGCTAAGGTAATTTGCTAGATATTTTAGTTAAGG
ACTAAGATCATGAGGTTGATTAATTACTGTTAGGACACAATAATTGGAGGGAGATGGTGTTGAC
GCAGAGGAAGTGACGGCGGTATGGCTTGGATTTGGACATATTTTGGACATTTTCAAACTTCAGG
GGAAGAAGAGTGGACTTAACAATTGCATTAACATAATATGAATAAACCCACATGGATTATACTA
ATGATGATTTACAGTGAATCCAAAATTAAATAATGGACGTCTCAGAGCTGTCCTTGTGATTTTT
TGCCAATTTAATGGAAATTTGCAGAATCAAACAAAAGGAAAAATATATTAGTTTTTCTACTTTC
TTGTATTATACAGTTGTATAGAAAGAGGTTGTGGCACACCAATCATAACTGTAGAAGTGTATGG
CATCTTATATGACAGTGACGTGCATTATAGCGATGCGTGTATATGAAACCAGCTGTTAAGGTTG
AAAAAAAGTTTACTATCTTTTGGACTGATCATGTCCGGTTATGATTAGCATTCAGCAGGTTTTA
ATTAAGTAAATCAGGCAAAAAAAGGACCTAATCCCATTTACTAACTATTCAATTTACGCTTCCT
AGGAACGGATGAATTTTGCCTTTTGTTTTTTTAGAGATCGAACTGATTCCTGCGAGAATTCTGT
AGAACTCCTGTATATCAAAGGAGCCCTGCAATCTGCAAATAAAGTACATATGTCAATGATTTTC
TTGAACAGTATATAGCATGAGAACCTTGTAATCCTTTAGTACTAGCATGGTACAAGGAAATATT
TGTTCAATGCAATGGCAAAGTTGTAATTTTATTACACTTTCATATCCATTTTGCGTTTTTGCTA
TCAAACTGAGGACCAACAAGATCAAAGTACCAGAGAGTTCTTGCCTGAAACGTGGCCAGCTTGG
TACAGACTCCATTCAGTATACGGTTAAAACCTGAAACTTGGATGCATCTCCCTTTGTTTATATT
TTTTGTCAGTAGAGGACAGCAAGTTACTTTTTATTTGTTTGGATTGTACAATACTCTTAATGTG
TGTTTAGTTTACATCAAATTTGAAAGTTTGATTGAAATTGAAACGACAAAGGTTAGAAATTTTT
GTGTAGAAAAGTTTTGATGTGATGGAAAAGTTAGAAGTCTGAAGAAAAAGTTAGGAACTAAAAC
AGGCCTTAGTTCACTTGTATTTTCTATTTTGGGTTTGAACGTGCCATACTCACTGCAAGGGGAG
TTCTGATTTAAATTTATAGATTCATCTCTATTTATTTATCAAAATTAAAGAAAAGAATTATACA
TAGTATTAACCTGCACGTATCAACCCCCTAGGATATACACACACACCCCAAGTGTACAAAAAAA
ATAAAATTTTGAAATTCTTCATATTCTGTTCTTCCTCAATGACCGAAAAGGGCCTGAAATCAAA
TGAATTCCCTTCTGTTGGCCAGATCTGTTAGTGATTCACCTTCACCATTTCCTTTGGGAAACCA
AAATAATCTTAATTTTTCATAACCGCGAATTTTTAGCCTTTTTGGGCCTGACAACGCTGGCGGT
CAGCTTGATCCTAGGAATGGAAAATTCGCCACTTATCACTTTAGAAGCAACGATCTCGTTTGCA
GCATCGGTGAAGTGGACCCCATCCCAGCTGATGAACTTCTCACCAAGCTTACACAGGTCCTTGT
CATTGGCCGTGCAGCTTTTCTTCGGATCATAGTTGTAAGGGGGCCCTCCATGTCCACAACATGT
CATCAATGGCTTCTCAATCCCTGTACAAGAATTATATTAGATGCACAAATCTAGATATATTTTT
AAGGGGTTACAGCTGATTATAAGCCATAAAGGTTTATTAGCCATCCAAAAATAATTTATGAGTA
AAACTTTTGTATAAATGCCCTTAGCGACTTAAAAGCAGATGCTGAAAAAGAAACTAGGTTGAGA
AAACATCAAATTAACTTCAAAACTAAATTTTTAAATTTAAATTTTGGCAGCAACTTATAAGCCA
TAGGGCAAACATGAGGCCCCTTGCTTGAACTGACAAATAATATTAGTTATAGACCAGTCATTGT
TTTGAAAGCCTGTAGTTTTCGGGATGTCGAAATCACTAGGTCCAGATGTACCATTTTAGTTGCT
GAATGTTTGGCTCATAGAATTGACAGGTTAACTTACCGTGTTTCGTGTGGTTGGCAACAAGATC
ATACTTGATGGCGAACATGTCCACGAAGACGATCGTCGAGCTTGCGAATTGCAAGCGCAGATCA
TCGCAGGTTTCGCTCAGCAACTTGTTGAACCTCTTGGCAACATTGTTGATTCTTGTGATGCAGC
CATGCTCGTCGAGATCACGATCAATTTCCCCCCTCGTAGCAAGCTTCTGAGGCAGGCAACCCAA
TGCACCCGTTCCATGTATCCAAAACTTCTTGGCCCCATTCTTATGCAAAGTCTGCAGTTTGGCA
AGGGTTCAATGATCATTTCTCTGAATAACTGATAGTATTTTTTTTTTACTTCAGAACTTACTGG
TTTAAGGGAGAAGTTTAGATAAAAATTTGAGCTGTTTACTGAGAATAATTTATCATATGTGCTA
CTGTTTTATTGACTTGAACCAAATGTACCTCAATGGCTTTCCTGATTTCAGCAACTATGGGAGG
AAGCTTTCGAAGAATTTCATCATAGGACAAGTGCAAAACGCCCATTAAATCATTGTGCCCTATG
TCCATGGTATAGAGGGCATTTTCAAACCCTTTGCTATCAATTGGGGCATCCTCACCTGGATGAC
ATTCACCAAAATTAAGCAACTTTGTCACTCCAAAACAATGCAAATAAGTCGGAAACCCAATTAA
TTGCGCAAAAAAGGAACACTTTGCTTAGAACAAAATGTCACCAAATTAAGATCAAACCGACCTC
TTTCGATGGACTCCAAGCATCTCTCCTTGAAAAATATGAACTGATCAAGCTGCACATCAAGCGA
AAATGTGGTTTCTCCCGGTGTTGCCGTCGAGCCGGCGATGGCGAATTCACACCGTTGTTGTAAT
CCGCTCCCAGTGGCCTCATGAACGGGCTGAGGTGGTGAGTGTTCAAGCTCTCAC
Conservation Information
Conserved circRNAs osa_circ_026722
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021